Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1891 136 3e-27 seq10171 95.1 9e-15 seq8372 93.3 3e-14 seq8124 93.3 3e-14 >seq1891 Length=13189 Score = 136 bits (150), Expect = 3e-27 Identities = 180/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | | |||||| || || ||| |||||| ||||||||||| Sbjct 9214 TTGCATGCCTCCACGCAGACGAAGCACCAGATGGAGTGTGGACTCCTTCTGGATGTTGTA 9273 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| || |||| |||| |||||| |||||||| ||||| ||||| || Sbjct 9274 GTCCGAAAGAGTT--CGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAATCGCTGTTGG 9331 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGC 44280 |||| || | |||||||| || ||||| |||| | | || | || |||||| Sbjct 9332 TCTGGGGGAATGCCTTCCTTGTCTTGGATCTT-GGCTTTGACGTTTTCGATAGTGTCGCT 9390 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || |||||| |||| || || ||||| || ||||| ||||| || ||||||||||| || Sbjct 9391 GGCTTCCACTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAGATTTGCATAAT 9450 Query 44341 GTGAA 44345 || || Sbjct 9451 GTAAA 9455 Score = 122 bits (134), Expect = 6e-23 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG- 44168 ||| || | ||| | | ||||| || || ||| |||||| ||||||||||| || | Sbjct 7892 TCCTCCACGCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGA 7951 Query 44169 -CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| || |||| || | |||||| |||||||| ||||| ||||| || |||| Sbjct 7952 AAGAGTT--CGGCCGTCCTCTAACTGCTTACCGGCAAAAATCAATCGCTGTTGGTCTGGG 8009 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| |||| | | || | || |||||| || ||| Sbjct 8010 GGAATGCCTTCCTTGTCTTGGATCTT-GGCTTTGACGTTTTCGATAGTGTCGCTGGCTTC 8068 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 8069 CACTTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTTACGAAGATCTGCATG 8120 >seq10171 Length=5186 Score = 95.1 bits (104), Expect = 9e-15 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 44193 GCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCT 44252 |||| || ||||||||||| ||||||||||||| || | || ||||| ||| |||| Sbjct 641 GCTTACCAGCAAAGATCAATCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCT 582 Query 44253 TCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 | ||| | |||| | |||||||| | | ||||| || | |||||| ||||| || Sbjct 581 TGGCCTTGAC-GTTCTCGATGGTGTCAGACGCCTCCACTTCGAGCGTAATTGTCTTGCCA 523 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || ||||||||||| Sbjct 522 GTCAGTGTCTTGACAAAGATTTGCAT 497 >seq8372 Length=2112 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||||||||||||||||||||| | || | || ||||| ||| ||||| Sbjct 1415 CTTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 1356 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | ||| | || ||||| | | ||| || || | || ||||||||||||| Sbjct 1355 G-GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCG 1297 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||||||||| |||||||| Sbjct 1296 TTAAAGTCTTCACGAAAATTTGCAT 1272 >seq8124 Length=14328 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||||||||||||||||||||| | || | || ||||| ||| ||||| Sbjct 8087 CTTACCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 8028 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | ||| | || ||||| | | ||| || || | || ||||||||||||| Sbjct 8027 G-GCTTTGACATTCTCGATTGTGTCCGACGCTTCGACTTCAAGAGTGATCGTCTTTCCCG 7969 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||||||||| |||||||| Sbjct 7968 TCAAAGTCTTCACGAAAATTTGCAT 7944 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || || ||||| |||||||| |||| || | ||| ||||| ||| ||||| | Sbjct 8367 CCTGCGAAAATCAAGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTAGCC 8308 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | |||| | || || || | | || ||||||| ||||| ||||| || ||||| Sbjct 8307 TTGAC-GTTCTCGATAGTATCAGATGCCTCTACCTCCAGGGTAATGGTCTTGCCAGTGAG 8249 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 ||||||||||||||||||||| Sbjct 8248 CGTCTTCACGAAGATTTGCATG 8227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359924545381170