Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8372 118 3e-21 seq8124 118 3e-21 seq10171 98.7 2e-15 seq14918 86.0 2e-11 seq14890 86.0 2e-11 >seq8372 Length=2112 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||| | || ||||| |||||||| || || || ||| || ||| Sbjct 1275 CAAATTTTCGTGAAGACTTTAACGGGAAAGACGATCACTCTTGAAGTCGAAGCGTCGGAC 1334 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| ||||| |||||||| || |||||||| ||||| ||||| Sbjct 1335 ACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAGCAG 1394 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| || || || Sbjct 1395 CGTTTGATCTTTGCTGGTAA 1414 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || || |||||||| |||||||| || || Sbjct 1564 CAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATCTGAT 1623 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 1624 ACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAG 1683 Query 178044 CGACTTATCTTCGCCGG 178060 || | || ||||| || Sbjct 1684 CGCTTGATTTTCGCAGG 1700 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || || |||||||| |||||||| || || Sbjct 1853 CAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATCTGAT 1912 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 1913 ACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAG 1972 Query 178044 CGACTTATCTTCGCCGG 178060 || | || ||||| || Sbjct 1973 CGCTTGATTTTCGCAGG 1989 >seq8124 Length=14328 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||| | || ||||| |||||||| || || || ||| || ||| Sbjct 7947 CAAATTTTCGTGAAGACTTTGACGGGAAAGACGATCACTCTTGAAGTCGAAGCGTCGGAC 8006 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| ||||| |||||||| || |||||||| ||||| ||||| Sbjct 8007 ACAATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGATCAGCAG 8066 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| || || || Sbjct 8067 CGTTTGATCTTTGCTGGTAA 8086 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || || ||||| ||||| || || || Sbjct 8231 CAAATCTTCGTGAAGACGCTCACTGGCAAGACCATTACCCTGGAGGTAGAGGCATCTGAT 8290 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 8291 ACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAG 8350 Query 178044 CGACTTATCTTCGCCGG 178060 || | || ||||| || Sbjct 8351 CGCTTGATTTTCGCAGG 8367 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || || || ||||| ||||| || ||| Sbjct 8517 CAAATCTTTGTCAAGACATTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTCTGAC 8576 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||||||||| || || || |||||||||||||| Sbjct 8577 ACCATTGAGAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 8636 Query 178044 CGACTTATCTTCGCCGG 178060 |||| || ||||| || Sbjct 8637 AGACTGATTTTCGCAGG 8653 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || || || || ||||| || || ||||| ||||| || |||||| Sbjct 8924 ATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTCTGACACC 8983 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| || || || || || || || |||||||| || || ||||||||||| ||| Sbjct 8984 ATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCAGCAGCGA 9043 Query 178047 CTTATCTTCGCCGGAAA 178063 | ||||| || || || Sbjct 9044 TTGATCTTTGCTGGTAA 9060 >seq10171 Length=5186 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || || |||||||| |||||||| || || Sbjct 215 CAAATATTTGTGAAGACGCTCACTGGCAAGACCATCACCCTGGAGGTGGAGGCATCTGAT 274 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 275 ACTATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAG 334 Query 178044 CGACTTATCTTCGCCGG 178060 || | || ||||| || Sbjct 335 CGCTTGATTTTCGCAGG 351 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || || || ||||| ||||| || ||| Sbjct 500 CAAATCTTTGTCAAGACACTGACTGGCAAGACAATTACGCTCGAAGTGGAGGCGTCTGAC 559 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| |||||||||||||| || || || || || || ||||| Sbjct 560 ACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCGCCAGATCAGCAG 619 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | ||||| || || || Sbjct 620 CGATTGATCTTTGCTGGTAA 639 >seq14918 Length=33047 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| || || ||||| ||||| || ||| Sbjct 403 CAGATCTTCGTTAAGACACTGACTGGCAAAACAATTACGCTCGAAGTGGAGGCGTCTGAC 462 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || || || || || |||||||| || || ||||||||||| Sbjct 463 ACCATCGAAAATGTGAAGGCTAAAATCCAAGATAAAGAAGGCATTCCGCCGGACCAGCAG 522 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | ||||| || || || Sbjct 523 CGATTGATCTTTGCTGGTAA 542 >seq14890 Length=108563 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || || |||||||| | || || || || ||| Sbjct 69606 CAAATCTTTGTCAAAACATTGACGGGCAAGACGATCACGTTGGAAGTCGAGGCTTCGGAC 69665 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||||||||| |||||||| || || || ||||| Sbjct 69666 ACAATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGAATTCCACCAGATCAGCAG 69725 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || || || || Sbjct 69726 CGACTCATTTTTGCTGG 69742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203499703681940