Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq415 98.7 2e-15 seq1218 96.9 7e-15 seq1454 91.5 3e-13 seq522 89.7 1e-12 seq2309 87.8 4e-12 seq1859 87.8 4e-12 seq238 84.2 5e-11 >seq415 Length=67053 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 6009 CCGTCTAGCTCAGTTGGTAGAGAACCAGTCTTTTAATCTGAGGGTCGTGGGTTCGAGCCC 5950 Query 165772 CACGATGGGCAT 165783 |||| ||||||| Sbjct 5949 CACGGTGGGCAT 5938 >seq1218 Length=27336 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| Sbjct 23435 CCGTCTAGCTCAGTTGGTAGAGAACCAGTCTTTTAATCTGAGGGTCGTGGGTTCGAGCCC 23376 Query 165772 CACGATGGGCA 165782 |||| |||||| Sbjct 23375 CACGGTGGGCA 23365 >seq1454 Length=21168 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 11806 TGCCCGGCTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 11747 Query 165769 CCCCACGATGGGC 165781 |||| || |||| Sbjct 11746 CCCCGCGTCGGGC 11734 >seq522 Length=60105 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| ||||||| |||| |||||| |||| |||||||||||||||||| Sbjct 59653 CCGTCTAGCTCAGTTGGTAGAGAACCAGTCTTTTA-TCTGAGGGTCGTGGGTTCGAGCCC 59595 Query 165772 CACGATGGGCA 165782 |||| |||||| Sbjct 59594 CACGGTGGGCA 59584 >seq2309 Length=7005 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||| ||| ||||||||| |||| |||||||||||||||| Sbjct 6779 GCCCGTCTAGCTCAGTTGGTAAAGCATAAGACTTTTATTCTGAGGGTCGTGGGTTCGAGC 6720 Query 165770 CCCACGATGGGCA 165782 ||||| |||||| Sbjct 6719 TCCACGGTGGGCA 6707 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||| |||||||||||| | |||||||||||||||| Sbjct 7005 GCCCGTCTAGCTCAGTTGGTAGAGCATTAGACTTTTAATCAGAGGGTCGTGGGTTCGAGC 6946 Query 165770 CCCACGATGGG 165780 || ||| |||| Sbjct 6945 CCTACGGTGGG 6935 >seq1859 Length=13618 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 4552 GCCCGGCTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 4611 Query 165770 CCC 165772 ||| Sbjct 4612 CCC 4614 >seq238 Length=88230 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 66635 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 66694 Query 165769 CCCC 165772 |||| Sbjct 66695 CCCC 66698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057771426477770