Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq263 105 8e-18 >seq263 Length=84048 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 || ||| || || ||||| |||||||| | ||||||||| |||| ||||| | | Sbjct 20545 TTTATGTATCCCAACTGCTACACGCATGAGCATGTGCTGTGGTCGCTCAACAACTTCACC 20604 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 |||||||| ||||| || || | ||||||||||||||| |||||||| | || || || Sbjct 20605 ATTTATTTTTAGCAAATACGACTGTTCCAAAGTTTTAAAGCCAAAATACGTATACGAGAA 20664 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 ||||| || |||| || || || || ||||| Sbjct 20665 ATCTCGATCATAAACGATCACGGAATTAAGTTT 20697 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 53499 CAAATGG-ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 53557 ||||| | ||| || | ||| | ||| || ||||| | ||| || ||||||||||| || Sbjct 19044 CAAATAGTATACTTCATGAGCAAAAATGCATCTGCAAGTCCCTGCACACCAATACCAATT 19103 Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 |||| ||| | | | || ||| || || ||| |||||||||||||| || ||| || Sbjct 19104 GGTCGATGACGCATGTTTGAGTGTTTAGTTTCAGGAATAGGATAATAGTTGCCATCAATT 19163 Query 53618 ATTTTATT 53625 |||||||| Sbjct 19164 ATTTTATT 19171 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 |||||||| |||||| || | |||||| || || ||||| || ||||| ||| Sbjct 19733 GTATACAAAGCTTCAAATTCCTGGCCCCAACAATCCGGTAACCCAGGGCACTCATCAGGA 19792 Query 53999 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 54058 |||||||| ||||| | | |||| || ||||||| |||||| | |||||| | ||| Sbjct 19793 CACATCAATGACCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACCCAC 19852 Query 54059 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 54118 | ||| | |||| ||| || || | | || ||| | || |||| || | Sbjct 19853 AAAGCAAAGAATAAATCCCTTGTACGTTCCTCATCGGTACCAATATTATTACGCATTAGT 19912 Query 54119 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 | ||| | | |||||||| ||||| || |||||||| Sbjct 19913 AAAAACTCAAAAATATCAGCGTGCCATGGCTCCAAGTA 19950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593692811923920