Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_001884.1 Length=134416 Score E Sequences producing significant alignments: (Bits) Value seq2781 129 5e-25 >seq2781 Length=2584 Score = 129 bits (142), Expect = 5e-25 Identities = 526/816 (64%), Gaps = 35/816 (4%) Strand=Plus/Minus Query 10439 TAGAGAATCATCACGGTGTAATGGACGTATGGGCTAAACACAATGTTCCGAATTATGTGA 10498 |||||||||| || || ||| |||| || ||||| | || ||| || || ||| Sbjct 1851 TAGAGAATCACCATGGAGTATTGGATGTTTGGGCAACTCATAATATTAATAAATATAAAT 1792 Query 10499 GTAGAGGGAGTAACACACCAACAGTAGCTTTAACTAAGGAACAACACAACGCTACCAAGA 10558 ||||| | || || || || | || || ||||| |||| || ||||| || | Sbjct 1791 CTAGAGCAAAAAAATCAACATCAATTGCGTTGACTAAACAACAGCATGCAGCTACAAAAA 1732 Query 10559 AAGTATATAGAGAATGGTTGTTCGAAAAAACAGGGAAGAAAGTTGGCGGCAAAGTAAACT 10618 |||| || ||||| |||||||| ||||||| || || | |||||| || ||| | | | Sbjct 1731 AAGTCTACAGAGAGTGGTTGTTTAAAAAAACTGGAAAAAGAGTTGGAGGAAAAATTGATT 1672 Query 10619 GGAA-AGAAGTATCCCCCAGAGAAATACAAGAACTTACTGAGAAGATGTTTGATGCTGCT 10677 ||| || | |||| || |||||||| ||| | | | || | ||||||||||| || Sbjct 1671 GGAGTAGTA-TATCGCCAAGAGAAATTCAATATTTAGCAGAAGAAATGTTTGATGCAGCA 1613 Query 10678 AATGTTCCTAAAGAAGCTAGACAGCAATATTATAACGCATTTAATCAATACAACT----- 10732 || || ||| || | || ||| | || |||| | |||||||| || | | Sbjct 1612 AAAGTACCTGAATACGCAAGAAGAGATTACTATAGGGAATTTAATCGTTATATTTATGGA 1553 Query 10733 TTAGAA-AGTAGGTGCGGACTTGAGCATTGACATGTTA------ATCAAGAAGATTGCTT 10785 |||||| | |||| | | | | | || || || ||| | || || | | Sbjct 1552 TTAGAAGATTAGGAG-GTA--TAAAAATGGATATTTTACAGATGCTTAATAAATTATATA 1496 Query 10786 CTACATCAGACTGTCGGCTGTTTGAAG--CTGATGGTCTCCCAGTAATAGACGAGAAG-- 10841 |||| |||||||| ||| | || | |||| | || ||||| | ||| Sbjct 1495 ATACACCAGACTGT--ATTGTATATAGTCCGTGTGGTTTACCCTCAATAG--GTAAAGGA 1440 Query 10842 CATCAACTACCAAAAGATATTAGTGAATTTTATGAACAATGTGGTGGAGCAGTTTTATAT 10901 || || |||| | ||| | | | |||||||||| | |||||||| | || | | Sbjct 1439 AATGAATTACCTGATGATTTAAAAGTATTTTATGAAAATTGTGGTGGGGTTTCATTGTTT 1380 Query 10902 GAAAATGCGGATTATCCAATATAC-ATAGTACGACCAGCTGAGTTTGAATTAGCTAATCC 10960 | ||| || ||| || ||| || ||| | || | |||| | | ||||| ||||| Sbjct 1379 GCTAATAAAGACTAT-GGATTTACAATTGTAAGTCCTGATGAGATGGTTTTAGCGAATCC 1321 Query 10961 CATTATTGTTGGGGAGCTCTGTGAAGAAGACATTTCATCCGAGTGGTATATTGTTTGCAC 11020 |||||||||| || || ||||| || || || ||||| | |||||||| || || | Sbjct 1320 GGTTATTGTTGGAGAACTTTGTGAGGAGGATATATCATCAAAATGGTATATAGTGTGTAA 1261 Query 11021 GGATGGAAAAGGAGAATACCTA----ACAATTGACTTAAACGATCAGCGAAAAGGAAAAT 11076 |||| | ||||||| || || ||||| || | | || || | || Sbjct 1260 GGAT----ACTGAGAATAATTATATTACTATTGATTTGGCGAAAGAAAGATTGGGGAGAT 1205 Query 11077 GCTATGACAGtttttttGATCGACATGGAATAGTCGGCGAAACACAGGTGATAGCAAGTT 11136 | ||||| ||||||| ||| | || ||| | || || || | | || ||||| Sbjct 1204 GTTATGATAGTTTTTGGGATAGGCACGGAGTGGTAGGAGAGTGTCCAATTATTGCAAGAA 1145 Query 11137 CATTTACAGATTTAATACAGCGACTGCTTGAAAATAAGGGTAAACATTGGTATTGGTTAA 11196 | |||||||| ||| | | | | || | ||| | ||| || | ||||||||| | Sbjct 1144 CTTTTACAGAATTAGTGACTCAATTATTTAATAATCAAGGTGAAAGCTTGTATTGGTTGA 1085 Query 11197 GGGATGATTATGTATCACTAGGCGATGCATATGATG 11232 ||||||| |||| | || ||||||||||||| Sbjct 1084 ATGATGATTTTGTAAATATTGGTGATGCATATGATG 1049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429986071313063