Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq263 113 6e-20 >seq263 Length=84048 Score = 113 bits (124), Expect = 6e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 ||||||||| || || || || ||| || || ||||| |||||||| | |||||| Sbjct 20521 CTCAATAGCACCTTCAATGTCATTTTTATGTATCCCAACTGCTACACGCATGAGCATGTG 20580 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 ||| |||| ||||||| || |||||||| | ||| || || | |||||||||||| Sbjct 20581 CTGTGGTCGCTCAACAACTTCACCATTTATTTTTAGCAAATACGACTGTTCCAAAGTTTT 20640 Query 63848 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 ||| |||||||| | || || || ||||| || |||| || || ||||| || || Sbjct 20641 AAAGCCAAAATACGTATACGAGAAATCTCGATCATAAACGATCACGGAATTAAGTTT 20697 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 64017 TTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || |||| |||||||| | |||| || ||||||| || || | ||| | |||||| Sbjct 21075 TTCTTCGTTTTCTTGTGTAAACTTGAAATTGCTATTCGCGCAGCCAAAATTCCGTAATCC 21134 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||||| ||| | | || ||| ||||||| || | | | |||||||| |||||| Sbjct 21135 GGATGTTTCAAAGTCATATTAGCCGCTGTTTCGGCAGCTAAATTATCCAATTCAACCGTT 21194 Query 64137 GTTACTCCATTATATATTCCTTGAATAACCTT 64168 || || ||| ||| | ||| ||| ||||| Sbjct 21195 GTCACGCCAGAATACAATCCCGCAATCACCTT 21226 Score = 82.4 bits (90), Expect = 1e-10 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 |||||||| ||| || || | |||||| || || | ||| || ||||| ||| Sbjct 19733 GTATACAAAGCTTCAAATTCCTGGCCCCAACAATCCGGTAACCCAGGGCACTCATCAGGA 19792 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63296 |||||||| ||||| | | |||| || ||||||| |||||| | |||||| | ||| Sbjct 19793 CACATCAATGACCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACCCAC 19852 Query 63297 AGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63356 | ||| | |||| ||| ||||| | | || ||| | || |||| || | Sbjct 19853 AAAGCAAAGAATAAATCCCTTGTACGTTCCTCATCGGTACCAATATTATTACGCATTAGT 19912 Query 63357 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | ||| | | |||||||| ||||| || |||||||| | || | | |||| |||| Sbjct 19913 AAAAACTCAAAAATATCAGCGTGCCATGGCTCCAAGTAAACAGCAAAAGCTCCTGGCC 19970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787061719120