Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq263 95.1 1e-14 >seq263 Length=84048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 37984 GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACC 38043 |||||||| | ||||| |||||| |||| || |||||||||||||||||||| ||| Sbjct 19790 GGACACATCAATGACCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACC 19849 Query 38044 CATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAG 38103 || || ||| |||||||| | || | | || ||| | || | ||| || | | Sbjct 19850 CACAAAGCAAAGAATAAATCCCTTGTACGTTCCTCATCGGTACCAATATTATTACGCATT 19909 Query 38104 CTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGT 38163 || ||| || || ||||||||||||||||| || | |||| | | |||||||| Sbjct 19910 AGTAAAAACTCAAAAATATCAGCGTGCCATGGCTCCAAGTAAACAGCAAAAGCTCCTGGC 19969 Query 38164 CT 38165 || Sbjct 19970 CT 19971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468502082403760