Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq263 113 6e-20 >seq263 Length=84048 Score = 113 bits (124), Expect = 6e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 72483 CTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542 ||||||||| ||| || || || |||||| || || || |||||||| | ||| || Sbjct 20521 CTCAATAGCACCTTCAATGTCATTTTTATGTATCCCAACTGCTACACGCATGAGCATGTG 20580 Query 72543 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602 ||| |||| ||||| | | ||||||||| | ||| || || | |||||||||||| Sbjct 20581 CTGTGGTCGCTCAACAACTTCACCATTTATTTTTAGCAAATACGACTGTTCCAAAGTTTT 20640 Query 72603 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 ||| |||||||| | || || || ||||| || |||| || || ||||| ||||| Sbjct 20641 AAAGCCAAAATACGTATACGAGAAATCTCGATCATAAACGATCACGGAATTAAGTTT 20697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 71932 GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGA 71991 ||||| || ||| || || | |||||| || ||| ||||| || |||| ||| Sbjct 19733 GTATACAAAGCTTCAAATTCCTGGCCCCAACAATCCGGTAACCCAGGGCACTCATCAGGA 19792 Query 71992 CACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAA 72051 |||||||||||||| | |||||| || ||||||| |||||| | |||||| | ||| Sbjct 19793 CACATCAATGACCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACCCAC 19852 Query 72052 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 72111 | ||| | |||| ||| || || | | ||| ||| | || |||| || | Sbjct 19853 AAAGCAAAGAATAAATCCCTTGTACGTTCCTCATCGGTACCAATATTATTACGCATTAGT 19912 Query 72112 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169 | ||| | | |||||||| ||||| || |||||||| | || | | |||| |||| Sbjct 19913 AAAAACTCAAAAATATCAGCGTGCCATGGCTCCAAGTAAACAGCAAAAGCTCCTGGCC 19970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671106658138040