Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq82 113 1e-19 seq1 100 7e-16 seq84 95.1 3e-14 >seq82 Length=127425 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||||| || || || || || || || |||||||| || || ||||||||| Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | || || || || || || ||||||||||| |||||||| | Sbjct 56293 TTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAAA 56352 Query 104540 GTTTTTACAAATATCTGCAT 104559 || |||||||| |||||||| Sbjct 56353 GTCTTTACAAAAATCTGCAT 56372 >seq1 Length=360011 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494 ||||||| |||| ||| || ||||||||||||||||| | || || |||||||| | Sbjct 165425 CTCTGTTCTTCAGTAGGAATGCCTTCTTTATCCTGAATTCTCGCCTTCACATTTTCAATA 165484 Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 || || |||||| |||| || ||||||||| ||| || || ||||| ||||| ||| Sbjct 165485 GTGTCTAAAGGTTCCGCCTCAAGGGTAATAGTCGCACCCGTGAGGGTTTTAACAAAAATC 165544 Query 104555 TGCAT 104559 ||||| Sbjct 165545 TGCAT 165549 >seq84 Length=125161 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| ||||| || || || || || ||||| || || || |||||||| ||| Sbjct 125040 CCAGCAAAAATGAGCCTTTGCTGCTCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 124981 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | || || || || || || || ||||| || || || || | | Sbjct 124980 TTCACGTTCTCAATTGTGTCTGAAGACTCGACATCAAGGGTAATTGTTTTGCCTGTCAAT 124921 Query 104540 GTTTTTACAAATATCTGCATTTTGT 104564 ||||| || ||||| |||||||||| Sbjct 124920 GTTTTCACGAATATTTGCATTTTGT 124896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151341175859332