Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq82 86.0 6e-12 >seq82 Length=127425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| |||| ||||| | |||||| ||||| ||||| ||||||||||| | || ||||| Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || ||| ||||||| || || |||| || || ||||| ||||| | | Sbjct 56293 TTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAAA 56352 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || ||||| |||||||| Sbjct 56353 GTCTTTACAAAAATCTGCAT 56372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448269463480440