Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq483 188 1e-43 seq847 159 5e-35 seq2625 154 2e-33 >seq483 Length=62545 Score = 188 bits (208), Expect = 1e-43 Identities = 206/270 (76%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||||| ||||| || || ||||| || ||||| ||||| Sbjct 56449 GCGAAGCGTCATCGAAAAGTGCTTCGTGATAATATTCAGGGAATTACTAAGCCTGCTATT 56390 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | ||||| |||||||| ||||| ||| | |||||||| | |||||||||| Sbjct 56389 CGTCGTTTAGCTCGGCGTGGTGGTGTCAAACGTATTTCTGGATTAATTTATGAAGAGACA 56330 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG-- 16610 |||| ||| |||| | || | ||| |||||| | ||| ||| | ||| ||| | Sbjct 56329 CGTGGTGTGCTGAAAGTATTTTTGGAGAACGTTATTCGTGACGCTGTT-ACT-TACTGTG 56272 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| |||||||||||||| || || | |||||| | || ||||| |||||||||||| Sbjct 56271 AGCATGCTAAACGTAAGACGGTTACAGCAATGGATGTGGTTTATGCTCTGAAACGTCAAG 56212 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | |||| |||||||||||||| | |||| Sbjct 56211 GTCGTACACTTTATGGTTTTGGAGGGTAAT 56182 >seq847 Length=41180 Score = 159 bits (176), Expect = 5e-35 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | | |||||| ||||| || || ||||| || || || ||||| Sbjct 11084 CGCTAAGCGTCATCGTAAAGTTCTTCGCGATAATATTCAGGGAATTACAAAACCCGCTAT 11143 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| || || ||| | || || | ||||||| || | Sbjct 11144 TCGTCGTCTTGCTCGTCGTGGTGGTGTGAAACGTATATCCGGGCTCATCTATGAGGAAAC 11203 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCG 16610 ||||| ||| |||||| | ||||| ||| ||||| | |||||| || || || || Sbjct 11204 TCGTGGTGTATTGAAGGTGTTCCTTGAGAATGTTATTCGTGATGCAGTTACA-TACTGCG 11262 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || | |||||||| || | ||||| | || || || | |||||||||| Sbjct 11263 AACACGCCAAGAGAAAGACTGTAACTGCGATGGACGTTGTGTACGCTCTCAAACGTCAAG 11322 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || || ||||| Sbjct 11323 GCCGAACTTTGTACGGCTTTGG 11344 >seq2625 Length=3532 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || || ||||||||||| ||||| || ||||| || Sbjct 3281 CGCAAAGCGTCATCGCAAAGTGTTACGTGACAACATCCAAGGTATCACGAAACCAGCGAT 3222 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||| | ||||| || ||||||||| |||| || | |||||||||| | Sbjct 3221 TCGACGTCTAGCTAGACGTGGCGGTGTCAAGCGTATCTCGGGGCTCATCTATGAAGAAAC 3162 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||||||| | || || ||| ||| || | ||||| | || ||| Sbjct 3161 TCGAGGCGTTTTGAAAGTATTTCTGGAGAACGTGATTCGGGATGCAGTGACGTACTGCGA 3102 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | ||||||||||| | |||||| |||| ||||| ||||| ||||| || Sbjct 3101 ACATGCCAAAAGAAAGACTGTCACGGCAATGGATGTCGTTTATGCCTTGAAGCGTCAGGG 3042 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| || ||| | ||| Sbjct 3041 CCGAACTCTCTATGGCTTCGGAGGGTAA 3014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071653403147