Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq263 104 3e-17 >seq263 Length=84048 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63677 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 ||||||||| || || || || ||| || || ||||| |||||||| | |||||| Sbjct 20521 CTCAATAGCACCTTCAATGTCATTTTTATGTATCCCAACTGCTACACGCATGAGCATGTG 20580 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 ||| |||| ||||| | | |||||||| | ||| || || | |||||||||||| Sbjct 20581 CTGTGGTCGCTCAACAACTTCACCATTTATTTTTAGCAAATACGACTGTTCCAAAGTTTT 20640 Query 63797 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 ||| |||||||| | || || || ||||| || |||| || || || || ||||| Sbjct 20641 AAAGCCAAAATACGTATACGAGAAATCTCGATCATAAACGATCACGGAATTAAGTTT 20697 Score = 82.4 bits (90), Expect = 1e-10 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185 |||||||| ||| || || | |||||| || || ||||| || ||||| ||| Sbjct 19733 GTATACAAAGCTTCAAATTCCTGGCCCCAACAATCCGGTAACCCAGGGCACTCATCAGGA 19792 Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245 |||||||| ||||| | | |||| || ||||||| |||||| | |||||| | ||| Sbjct 19793 CACATCAATGACCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACCCAC 19852 Query 63246 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63305 | ||| | |||| ||| || || | | || ||| | || |||| || | Sbjct 19853 AAAGCAAAGAATAAATCCCTTGTACGTTCCTCATCGGTACCAATATTATTACGCATTAGT 19912 Query 63306 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 | ||| | | |||||||| ||||| || |||||||| | || | | |||| |||| Sbjct 19913 AAAAACTCAAAAATATCAGCGTGCCATGGCTCCAAGTAAACAGCAAAAGCTCCTGGCC 19970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622916994847640