Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq228 93.3 1e-13 >seq228 Length=90632 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 111318 CCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTT 111377 |||||||| ||||| || || || ||||| ||| | || |||||||| || |||||| Sbjct 19810 CCACTTCTTACAACGAAAAGAGTTTACTGGAAAGGAGTAGTTGAAGAACTACTATGGTTT 19869 Query 111378 ATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGA 111437 |||||||| || ||| | || ||| | || |||||||| ||||| ||||||| | Sbjct 19870 ATTCGCGGTGAAACCAATTCGAAAACTCTTTCTGCGAAAAATGTTAAAATATGGGATGCA 19929 Query 111438 AATGGATCACG 111448 |||||||| || Sbjct 19930 AATGGATCTCG 19940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303288823733378