Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1986 86.0 4e-12 seq1641 84.2 1e-11 >seq1986 Length=11296 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| |||| ||||| ||| ||||||| |||| ||||||||||||| ||||||||||| Sbjct 7609 CTCTCACTTCGAAGTTTTTTACAACTTTTCCTCGCGGTACTTGTTCGATATCGGTCTCGA 7550 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||| | ||| Sbjct 7549 GGTCGTATTTATCTTTA 7533 >seq1641 Length=17469 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || |||||| | ||||| || || | |||||| ||||| || Sbjct 2985 CCTACAAAGTATTTTGGCTGCGAATTAGGCGCACAAACCAATTTTGATATGAAAAATGAA 2926 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 ||||| || ||||| || ||| | |||| |||||||| | | ||||||||||| Sbjct 2925 CGCTTTATTGTTAATGGGGAGCACGATGCTGCGAAGCTGCAAGGTATCCTTGACGGCTTC 2866 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||| |||||||| |||||| | ||| || || || || || Sbjct 2865 ATTAAAAAGTTTGTTTTGTGTCCCGCATGTGAAAATCCCGAAAC 2822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931365266449