Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq263 104 3e-17 >seq263 Length=84048 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 ||||||||| || || || || ||| || || ||||| |||||||| | |||||| Sbjct 20521 CTCAATAGCACCTTCAATGTCATTTTTATGTATCCCAACTGCTACACGCATGAGCATGTG 20580 Query 63592 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63651 ||| |||| ||||| | | |||||||| | ||| || || | |||||||||||| Sbjct 20581 CTGTGGTCGCTCAACAACTTCACCATTTATTTTTAGCAAATACGACTGTTCCAAAGTTTT 20640 Query 63652 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 ||| |||||||| | || || || ||||| || |||| || || || || ||||| Sbjct 20641 AAAGCCAAAATACGTATACGAGAAATCTCGATCATAAACGATCACGGAATTAAGTTT 20697 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 62541 CAAATGG-ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 62599 ||||| | ||| || | ||| | ||| || ||||| | ||| || ||||||||||| || Sbjct 19044 CAAATAGTATACTTCATGAGCAAAAATGCATCTGCAAGTCCCTGCACACCAATACCAATT 19103 Query 62600 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62659 |||| ||| | | | || ||| || || ||| |||||||||||||| || ||| || Sbjct 19104 GGTCGATGACGCATGTTTGAGTGTTTAGTTTCAGGAATAGGATAATAGTTGCCATCAATT 19163 Query 62660 ATTTTATTGAGATT 62673 |||||||| | ||| Sbjct 19164 ATTTTATTCAAATT 19177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633601276768400