Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq82 105 6e-18 >seq82 Length=127425 Score = 105 bits (116), Expect = 6e-18 Identities = 111/143 (78%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||||| || |||||| | || ||| | || || ||||| ||| Sbjct 56372 ATGCAGATTTTTGTAAAGACTTTAACTGGTAAAACTATTACACTTGATGTTGAGTCTTCT 56313 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || ||||||| | || ||||||||||| ||||| || ||| Sbjct 56312 GACACAATCGAA--AATGTAAAAGCAAAGATCCAA-GACAAAGAAGGCATTCCGCCAGAC 56256 Query 25116 CAACAGCGGATTATTTTTGCCGG 25138 || || ||| | ||||||||||| Sbjct 56255 CAGCAACGGTTAATTTTTGCCGG 56233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307514283385