Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1102 199 2e-45 seq106 125 3e-23 seq82 104 9e-17 >seq1102 Length=30933 Score = 199 bits (220), Expect = 2e-45 Identities = 444/658 (67%), Gaps = 14/658 (2%) Strand=Plus/Plus Query 451840 AATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGA 451899 |||| | |||||||| ||| |||| ||| ||||||| ||| | | |||| Sbjct 17041 AATGGACCCTGTTGAGAAAGCTTTACGCGATGCTAAAATGGACAAATCCCAGGTCCATGA 17100 Query 451900 AATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT-CTT 451958 ||||| | || || || ||||| || ||||| || | || | ||| ||||| ||| Sbjct 17101 CATTGTTTTGGTTGGTGGATCTACCCGTATTCCAAAGGTCCAGAAGATGCTGTCTGACTT 17160 Query 451959 ATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTG 452018 || | ||| || | || |||||| | || ||||||||||||||||| ||||||| Sbjct 17161 CTTCTC-AGGCAAGGAGTTAAACAAGAGCATCAACCCTGATGAAGCTGTTGCTTATGGTG 17219 Query 452019 CTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATTC 452075 | ||||| || ||||||||| | | ||| ||| | |||| | ||| | | Sbjct 17220 CAGCAGTACAGGCAGCTATTTTGTCTGGT---GATAAGTCTGAAGCTGTTCAAGACTTGC 17276 Query 452076 TGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTA 452135 || | | ||||| | || || || ||||| |||| || |||||||| | ||||| Sbjct 17277 TGCTTTTGGATGTTGCTCCACTTTCGCTTGGTATTGAGACTGCTGGTGGCGTTATGACAG 17336 Query 452136 ATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAA 452195 | | ||||| || || |||| || |||| ||| || || | ||| | | Sbjct 17337 CTCTTATTAAGAGAAATACAACTATCCCAACGAAAACATCTCAGACTTTCACTAC--CTA 17394 Query 452196 GT--GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACG 452253 | ||||| ||||| |||||| |||||||| | ||| || |||||||||||||| Sbjct 17395 CTCCGATAATCAACCTGGTGTATTGATTCAAGTTTATGAGGGCGAACGTGCAATGACTAA 17454 Query 452254 AGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAAC 452313 |||||| || || || |||| || || ||||| ||| ||||| || Sbjct 17455 AGATAACAACTTGCTTGGTAAATTCGAGCTATCTGGTATTCCACCTGCACCAAGAGGTGT 17514 Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 ||| ||||| || | || | |||| ||||||| ||||| || | || |||| ||| Sbjct 17515 TCCACAAATCGAGGTCACGTTTGATATTGATGCCAATGGAATCTTAAACGTGACAGCACA 17574 Query 452374 TGAAAAATCATCTGG-AAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTAT 452432 || |||||| |||| ||| ||| |||||||| ||||| ||||| || ||| | | Sbjct 17575 AGACAAATCAACTGGTAAACACAG-CAAAATTACTATTACAAATGACAAGGGTCGTCTTT 17633 Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | || || || |||||| ||||| | ||||| ||||| | ||||| ||||||||| Sbjct 17634 CCAAGGATGAAATTGAACGTATGGTCCAGGAAGCTGAAAAGTACAAGGCTGATGATGA 17691 >seq106 Length=114086 Score = 125 bits (138), Expect = 3e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 451226 GAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAA 451285 ||| | || ||||| ||||| |||||||| || |||||||| | || ||||| ||| Sbjct 30793 GAATCAAAGACTTTCGCTCCAGAAGAAATCTCTGCTATGGTTTTGGGGAAGATGAAGGAA 30734 Query 451286 ACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTAT 451345 | || ||| |||| | || || | | || ||| |||| || || || || Sbjct 30733 ATTGCTGAAGCATATTTAGGAAAAGAGGTAAAGCACGCTGTAGTTACAGTACCAGCATAC 30674 Query 451346 TTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGT 451404 ||||||||||| || || |||||||| |||||||| || ||| |||||||| |||||||| Sbjct 30673 TTCAATGATGCGCAGCGACAAGCAACAAAAGATGCTGGCACA-ATTGCTGGATTAAATGT 30615 Query 451405 TCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 | || || ||||| ||||| || ||||| ||| | || ||||| || Sbjct 30614 AGTACGGATAATTAACGAACCAACTGCAGCAGCTATTGCCTATGGCCT 30567 Score = 86.0 bits (94), Expect = 2e-11 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 452231 GAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAAC 452290 ||||| ||||| |||||||| ||||||| | | || || ||||| |||| | Sbjct 29481 GAAGGTGAACGACCAATGACAAAAGATAATCACATTCTTGGTAAATTTGATCTTACTGGT 29422 Query 452291 ATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAAT 452350 ||||| || || | || || ||||||||| | || | ||| |||| | |||| Sbjct 29421 ATTCCACCAGCTCCTCGCGGTGTGCCGCAAATTGAAGTAACATTTGAAATTGACGTAAAT 29362 Query 452351 GGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAA-ATTACAAT 452409 ||||||||| |||| | || | || || | | || || |||| || |||||||| Sbjct 29361 GGTATTCTTCATGTTACCGCCGAAGATAAGGGAACAGGCAACA-AGAATAAGATTACAAT 29303 Query 452410 TACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGA 452469 ||| |||||| | || | ||||| |||||||||||| | ||| | |||| || || Sbjct 29302 TACGAATGATCAGAATAGGTTATCACCAGAAGATATTGAGAGGATGATTAATGATGCCGA 29243 Query 452470 AAAATT 452475 || || Sbjct 29242 GAAGTT 29237 >seq82 Length=127425 Score = 104 bits (114), Expect = 9e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| || || || | ||||||||||||||||| ||||||||||| || Sbjct 56375 ATTATGCAGATTTTTGTAAAGACTTTAACTGGTAAAACTATTACACTTGATGTTGAGTCT 56316 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||| | || ||| | | ||| ||| || ||||| || ||||| ||||| || || Sbjct 56315 TCTGACACAATCGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCGCCAGAC 56256 Query 391167 CAACAACGTTTAATTTT 391183 || ||||| |||||||| Sbjct 56255 CAGCAACGGTTAATTTT 56239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975620207412932