Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1102 228 6e-54 seq106 125 5e-23 seq371 114 1e-19 >seq1102 Length=30933 Score = 228 bits (252), Expect = 6e-54 Identities = 401/576 (70%), Gaps = 6/576 (1%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||||||||| || || ||| |||||||| || || ||||| || | Sbjct 17617 ATTTGTAATAGTAATTTTGCTGTGTTTACCAGTTGATTTGTCTTGTGCTGTCACGTTTAA 17558 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 || ||||||||||| | |||||| ||||| || ||||| || || ||||| | ||||| Sbjct 17557 GATTCCATTGGCATCAATATCAAACGTGACCTCGATTTGTGGAACACCTCTTGGTGCAGG 17498 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||| || || | | ||| | || || || ||||||||||| | | ||||| Sbjct 17497 TGGAATACCAGATAGCTCGAATTTACCAAGCAAGTTGTTATCTTTAGTCATTGCACGTTC 17438 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||||| ||| ||| || || ||| ||||||||| || || || || || | ||| Sbjct 17437 GCCCTCATAAACTTGAATCAATACACCAGGTTGATTATCGGAGTAGGTAGTGAA-AGTCT 17379 Query 517453 G-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | ||| |||| || || ||||| ||||| | ||||| | ||||||| ||||| | Sbjct 17378 GAGATGTTTTCGTTGGGATAGTTGTATTTCTCTTAATAAGAGCTGTCATAACGCCACCAG 17319 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | || || | |||||| ||||| |||| ||||| | || | | | ||||| || Sbjct 17318 CAGTCTCAATACCAAGCGAAAGTGGAGCAACATCCAAAAGCAGCAAGTCTTGAACAGCTT 17259 Query 517572 CATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 || | | |||| |||| ||||||||| || | || |||||||| |||||||||||| Sbjct 17258 CAGACTTATCACCAGACAA-AATAGCTGCCTGTACTGCTGCACCATAAGCAACAGCTTCA 17200 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT- 517689 ||||| || | | | |||| | || || ||| || | || || | | ||| Sbjct 17199 TCAGGGTTGATGCTCTTGTTTAACTCCTTGCCTGAGAAGAAGTCAGACAGCA-TCTTCTG 17141 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 ||||| |||||||| | ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 17140 GACCTTTGGAATACGGGTAGATCCACCAACCAAAACAATGTCATGGACCTGGGATTTGTC 17081 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 517785 || ||| | ||| |||| |||| ||||| || || Sbjct 17080 CATTTTAGCATCGCGTAAAGCTTTCTCAACAGGGTC 17045 Score = 120 bits (132), Expect = 2e-21 Identities = 109/136 (80%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||| ||||| |||| ||||||||| ||||| || || ||||| | |||||||||||||| Sbjct 16445 CAAG-CCATAAGCAATAGCAGCAGCTGTTGGCTCGTTGATAATACGCAAAACATTAAGAC 16387 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 ||| |||| || |||||||| || ||||| || ||||| || || || || || |||| Sbjct 16386 CAGAAATTGCACCAGCATCTTTTGTTGCTTGCCTCTGTGAGTCATTGAAGTAAGCTGGAA 16327 Query 518292 CAGTAATAACGGCATC 518307 |||||| ||| || || Sbjct 16326 CAGTAACAACAGCGTC 16311 >seq106 Length=114086 Score = 125 bits (138), Expect = 5e-23 Identities = 176/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 || || || ||||| ||||||||| ||||||| || ||||||| ||||||| ||| Sbjct 30907 ACCTTGAAGGGCCACACTTTCATATCATCTTGAACAGTTCTGTCATTATAATCTCTGCCA 30966 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || || ||||| ||||| |||| ||||| |||||||| | | ||||| ||| || Sbjct 30967 ATCAAACGTTTGGCATCGAAAACTGTATTTTCGGGATTAATAGTAAGTTGATTTTTTGCG 31026 Query 518567 GCATCTCCAATCAGATGTTC-----TGTCTCT-GTAAATGAAACATATGATGGAGTTGTG 518620 || || || || | | | || |||| || || || | ||||||||| || || | Sbjct 31027 GCGTCACCTATTAAACGCTCACCGCTGTCACTAGTGAAAGCAACATATGACGGCGTAATT 31086 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | ||| || || ||||| || || || ||||| ||| |||| | ||||| |||||| Sbjct 31087 CTATTGCCCTGGTCATTGGCTATTATCTCAACACGACCGTTTTTATACACACCAACACAA 31146 Query 518681 CTAAAA 518686 |||||| Sbjct 31147 CTAAAA 31152 Score = 114 bits (126), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||| ||||| |||| ||| || ||||||||||| ||||| || | | ||| Sbjct 30558 TTCTTGTCAAGGCCATAGGCAATAGCTGCTGCAGTTGGTTCGTTAATTATCCGTACTACA 30617 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | ||||||||| | || |||||||| || ||||||| || | ||| || || ||| Sbjct 30618 TTTAATCCAGCAATTGTGCCAGCATCTTTTGTTGCTTGTCGCTGCGCATCATTGAAGTAT 30677 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || |||| || || | |||| ||||| || | ||| || || ||| Sbjct 30678 GCTGGTACTGTAACTACAGCGTGCTTTACCTCTTTTCCTAAATATGCTTCAGCAATTTCC 30737 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 ||||| || | |||| ||| | || |||| |||||| Sbjct 30738 TTCATCTTCCCCAAAACCATAGCAGAGATTTCTTCTGG 30775 Score = 113 bits (124), Expect = 3e-19 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 517170 TAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAAT-- 517227 ||||||| |||||||| | ||| || || || ||| ||| ||||| ||||| Sbjct 29253 TAATCATCCTCTCAATATCTTCTGGTGATAACCTATTCTGATCATTCGTAATTGTAATCT 29312 Query 517228 -ATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCAT 517286 ||||||| ||| |||| ||||| |||| || |||| |||||||||||| | | Sbjct 29313 TATTCTTG---TTGCCTGTTCCCTTATCTTCGGCGGTAACATGAAGAATACCATTTACGT 29369 Query 517287 CCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCA 517346 | | |||||||| ||||||||||| || || || | |||| ||||| || || | Sbjct 29370 CAATTTCAAATGTTACTTCAATTTGCGGCACACCGCGAGGAGCTGGTGGAATACCAGTAA 29429 Query 517347 AATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 517403 || |||| | || ||| | | ||||||||| || | | ||||||||| ||| ||| Sbjct 29430 GATCAAATTTACCAAGAATGTGATTATCTTTTGTCATTGGTCGTTCACCTTCGTAAA 29486 Score = 96.9 bits (106), Expect = 3e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || |||| |||||||||||||||||| |||||||| | |||| ||| || ||| Sbjct 30570 CCATAGGCAATAGCTGCTGCAGTTGGTTCGTTAATTATCCGTACTACATTTAATCCAGCA 30629 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 ||| | ||| ||| |||||||||| ||| || ||||| || ||||||||||| ||| Sbjct 30630 ATTGTGCCAGCATCTTTTGTTGCTTGTCGCTGCGCATCATTGAAGTATGCTGGTACTGTA 30689 Query 322364 A 322364 | Sbjct 30690 A 30690 >seq371 Length=70297 Score = 114 bits (126), Expect = 1e-19 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 668831 AAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGA 668890 |||||||| || | |||| ||| ||||||||||| |||||||| ||||||||||| Sbjct 58940 AAATCAATCAAACAACGTTTAAAAGGAAAAGAAGGTCGCATTAGAGGGAATTTGATGGGG 58881 Query 668891 AAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAAT 668950 |||||||| ||| | || |||||||| |||||||| | ||||| ||| | || | || Sbjct 58880 AAACGTGTTGATTTTTCAGCACGTACTGTTATTACGCCAGATCCAAATTTACCTATAGAT 58821 Query 668951 GAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAA 669010 | ||||| ||| | ||||||| | || | |||||| |||||||| ||| | Sbjct 58820 ACTATCGGTGTGCCTAGAACTATTGCTCAGAACATGACTTTTCCGGAAATTGTTACACCA 58761 Query 669011 CATAATATTGA 669021 ||| ||||| Sbjct 58760 TTTAACATTGA 58750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780629911242574