Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1102 273 3e-68 seq106 118 1e-21 seq32 84.2 3e-11 >seq1102 Length=30933 Score = 273 bits (302), Expect = 3e-68 Identities = 511/748 (68%), Gaps = 2/748 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || |||||||| || || |||||||| |||||| || || || || Sbjct 17691 TCATCATCAGCCTTGTACTTTTCAGCTTCCTGGACCATACGTTCAATTTCATCCTTGGAA 17632 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| ||||| ||||| || | |||||| | | || |||| Sbjct 17631 AGACGACCCTTGTCATTTGTAATAGTAATTTTGCTGTGTTTACCAGTTGATTTGTCTTGT 17572 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || | || || || || ||||| ||||||| ||| ||| | || | |||||||| | Sbjct 17571 GCTGTCACGTTTAAGATTCCATTGGCATCAATATCAAACGTGACCTCGATTTGTGGAACA 17512 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || || ||||| | ||||||||| | || || ||| ||||||| || ||||||| | Sbjct 17511 CCTCTTGGTGCAGGTGGAATACCAGATAGCTCGAATTTACCAAGCAAGTTGTTATCTTTA 17452 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | |||||| || ||||| |||| ||| || ||||||||||||| Sbjct 17451 GTCATTGCACGTTCGCCCTCATAAACTTGAATCAATACACCAGGTTGATTATCGGAGTAG 17392 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || | ||| | || | | || | ||| || || ||||||||| ||||| | ||| Sbjct 17391 GTAGTGAAAGTCTGAGATGTTTTCGTTGGGATAGTTGTATTTCTCTTAATAAGAGCTGTC 17332 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 |||| ||||| ||| || | ||||| || || || | || ||||| || | || | Sbjct 17331 ATAACGCCACCAGCAGTCTCAATACCAAGCGAAAGTGGAGCAACATCCAAAAGCAGCAAG 17272 Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 |||||||||| ||| | ||||| | || || || || || || | || || || Sbjct 17271 TCTTGAACAGCTTCAGACTTATCACCAGACAAAATAGCTGCCTGTACTGCTGCACCATAA 17212 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA-TCCGA 7107 || || || ||||| ||||| || | || || | || || || | | || || || || Sbjct 17211 GCAACAGCTTCATCAGGGTTGATGCTCTTGTTTAACTCCTTGCC-TGAGAAGAAGTCAGA 17153 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 | ||| | || | || || || || || |||||||| |||||||| || |||| || Sbjct 17152 CAGCATCTTCTGGACCTTTGGAATACGGGTAGATCCACCAACCAAAACAATGTCATGGAC 17093 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 | ||||| || || || | || || | | ||| || ||||| ||||| | ||| Sbjct 17092 CTGGGATTTGTCCATTTTAGCATCGCGTAAAGCTTTCTCAACAGGGTCCATTGTTGAACG 17033 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||| || || | || ||| |||||||| ||||| || ||| || |||||||| | Sbjct 17032 GAATAAATCAGCATTCAATTCTTCAAAACGAGCACGTGTGATGTTAGTGTAGAAATCGAT 16973 Query 7288 GCCGTCGTATAACGAATCAATTTCAATG 7315 ||| || | |||||||| ||||||||| Sbjct 16972 GCCTTCAAACAACGAATCGATTTCAATG 16945 >seq106 Length=114086 Score = 118 bits (130), Expect = 1e-21 Identities = 186/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 |||||||| | |||| || ||||| | | |||| | ||||| |||||| ||||| Sbjct 29225 TCTTCATCAGCAAACTTCTCGGCATCATTAATCATCCTCTCAATATCTTCTGGTGATAAC 29284 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCA 6691 || || |||||||||||| |||||||| | || || | |||||||||| || Sbjct 29285 CTATTCTGATCATTCGTAATTGTAATCTTATTCTTGTTGCCTGTTCCCTTATCTTCGGCG 29344 Query 6692 CTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCC 6751 | |||| | |||||||||| | |||| || || |||| | |||||| || ||| Sbjct 29345 GTAACATGAAGAATACCATTTACGTCAATTTCAAATGTTACTTCAATTTGCGGCACACCG 29404 Query 6752 CTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTG-TTATCCGTCGC 6810 | || || | ||||||||| || | ||||||| ||||||| || || ||||| | | Sbjct 29405 CGAGGAGCTGGTGGAATACCAGTAAGATCAAATTTACCAAG-AATGTGATTATCTTTTGT 29463 Query 6811 CTTCTTACGTTCACCTTCATAGAC 6834 | | ||||||||||| || || Sbjct 29464 CATTGGTCGTTCACCTTCGTAAAC 29487 >seq32 Length=175846 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||||||||| |||||| ||| || || || | ||| |||||||| | || Sbjct 123258 ATCAAAATCTTCACCGCCCAAGAATGTGTCTCCATTAGTTGATTTCACTTCAAATACTCC 123317 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | | ||| | || | ||||| |||||| || |||||||| || || ||| || | Sbjct 123318 TTTCTGAATTTCCAAAATCGAAATATCAAATGTGCCACCACCAAGATCGTAAA-CAGCAA 123376 Query 7576 GT-TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || |||| || ||||| || | || || | | || || || ||||| | Sbjct 123377 TTATCTTATCCTCAACTTTG------TCCATGCCATAAGATAATGCTGCAGCTGTTGGCT 123430 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||||||||| ||||||| || ||||||||||| | | || ||||| || || Sbjct 123431 CATTAATAACACGAAGAACATTGAGGCCAGCAATTTGTCCAGCGTCTTTTGTAGC 123485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635102003998360