Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq84 105 1e-17 seq82 93.3 9e-14 >seq84 Length=125161 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || || || || | ||| || ||||| || || || || ||||||||||| || Sbjct 125041 ACCAGCAAAAATGAGCCTTTGCTGCTCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGC 124982 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || ||||||||||| ||||| ||| || || |||||||||| || || |||||||| Sbjct 124981 TTTCACGTTCTCAATTGTGTCTGAAGACTCGACATCAAGGGTAATTGTTTTGCCTGTCAA 124922 Query 195120 AGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| | |||||||| Sbjct 124921 TGTTTTCACGAATATTTGCATTT 124899 >seq82 Length=127425 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || || || | ||||| |||||||| |||||||||||||||||||| || ||| Sbjct 56232 ACCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGC 56291 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || || || || ||||| ||| || || ||||| |||| || || || || || Sbjct 56292 TTTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAA 56351 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||| ||||| || | ||||| Sbjct 56352 AGTCTTTACAAAAATCTGCAT 56372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109426459111193