Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq263 102 9e-17 >seq263 Length=84048 Score = 102 bits (112), Expect = 9e-17 Identities = 163/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 48108 TATTTAGTATATAACTTCTCAAATTCAT--CCCCATACACATTATCTAACCCAGGACATT 48165 || || ||||| || |||||||| | ||||| ||| || ||||||||| || | Sbjct 19727 TACTTCGTATACAAAGCTTCAAATTCCTGGCCCCA-ACA-ATCCGGTAACCCAGGGCACT 19784 Query 48166 CATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTG 48225 ||| ||||||||||||||||||| ||||||||||| |||| |||||||| ||| | Sbjct 19785 CATCAGGACACATCAATGACCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAG 19844 Query 48226 GTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT---TGCCACTATTCC 48282 | | ||| | ||| | ||||||||||| || | |||| |||| | ||| |||| Sbjct 19845 GCACCCACAAAGCAAAGAATAAATCCCTTGTAC---GTTCCTCATCGGTACCAATATTAT 19901 Query 48283 TTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 | | | | ||| || | |||||||| |||||||| || || || Sbjct 19902 TACGCATTAGTAAAAACTCAAAAATATCAGCGTGCCATGGCTCCAAGTA 19950 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 47051 CCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATT 47110 ||| ||||| |||||||| || || | ||| |||| ||||||||| ||| |||||| Sbjct 18066 CCACCCATAAAAATGCATGCTGGTCACTTTTCTATAATTAGGTTCTGCGATAAAAATATT 18125 Query 47111 AAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATC 47158 | ||||| |||||||||||||| |||| |||||| ||||| || Sbjct 18126 CAACGATTGTGACTGATCAATAAATGGGCCTCGATCAGCAGCCATTTC 18173 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 ||| || || || || |||| || ||||||||||| |||| || | | | ||| | Sbjct 20259 ACCAATGCCGCCAGCATTTTTCGAAATTAGAGCACATTTCTTAATCGTCTTAAATATTTC 20318 Query 48542 TTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGT 48601 ||| |||||||||| | | | | |||||||| | |||||| || |||| || Sbjct 20319 TTCAGAACTATCATCTTCTACAGTAAGCAGAAAACACGAACTCATTTGAGGTCGACATGT 20378 Query 48602 TCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATA 48661 || ||||||||| ||||||| |||||| ||||||| || || | ||| ||||| Sbjct 20379 ACCGCTATTAAATAAAGTTGGAGTAGCATGAGTAAACCAACGTTCGGACATCAAATTATA 20438 Query 48662 TGT 48664 ||| Sbjct 20439 TGT 20441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562081544749560