Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1102 217 1e-50 seq106 129 5e-24 seq1440 95.1 1e-13 seq82 91.5 1e-12 >seq1102 Length=30933 Score = 217 bits (240), Expect = 1e-50 Identities = 374/537 (70%), Gaps = 6/537 (1%) Strand=Plus/Plus Query 552056 AACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACA 552115 |||||| || || || || ||| |||| | ||| | || || || |||||| | || || Sbjct 17038 AACAATGGACCCTGTTGAGAAAGCTTTACGCGATGCTAAAATGGACAAATCCCAGGTCCA 17097 Query 552116 TGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAA-ATGTTAAGTT 552174 ||| ||||| | |||||||||||||| | ||||| ||| || ||| ||| | | Sbjct 17098 TGACATTGTTTTGGTTGGTGGATCTACCCGTATTCC-AAAGGTCCAGAAGATGCTGTCTG 17156 Query 552175 -CTTATT-TCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTA 552232 ||| || ||| || || | ||||| | || | || || ||||| |||||||| || Sbjct 17157 ACTTCTTCTCA--GGCAAGGAGTTAAACAAGAGCATCAACCCTGATGAAGCTGTTGCTTA 17214 Query 552233 TGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATAT 552292 |||||| ||| | || ||||||||| | ||||| | | |||| | ||| | | Sbjct 17215 TGGTGCAGCAGTACAGGCAGCTATTTTGTCTGGTGATAAGTCTGAAGCTGTTCAAGACTT 17274 Query 552293 TGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGAC 552352 | ||| | |||||| |||| || || |||||| | || || | ||| || ||||||| Sbjct 17275 GCTGCTTTTGGATGTTGCTCCACTTTCGCTTGGTATTGAGACTGCTGGTGGCGTTATGAC 17334 Query 552353 TAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTA 552412 |||||| | |||||||| ||||| || |||| ||||| || |||| || Sbjct 17335 AGCTCTTATTAAGAGAAATACAACTATCCCAACGAAAACATCTCAGACTTTCACTACCTA 17394 Query 552413 TTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAA 552472 || ||||||||| ||| ||| |||||| ||| ||| || ||| | | | ||||| Sbjct 17395 CTCCGATAATCAACCTGGTGTATTGATTCAAGTTTATGAGGGCGAACGTGCAATGACTAA 17454 Query 552473 AGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGT 552532 |||||| || ||||||| || | || |||||||| ||||| || | || || Sbjct 17455 AGATAACAACTTGCTTGGTAAATTCGAGCTATCTGGTATTCCACCTGCACCAAGAGGTGT 17514 Query 552533 ACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 || ||||| || || || || ||||| |||||||||||||| || || ||||| || Sbjct 17515 TCCACAAATCGAGGTCACGTTTGATATTGATGCCAATGGAATCTTAAACGTGACAGC 17571 Score = 109 bits (120), Expect = 4e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 550392 TTAC-GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||| ||| || || | ||||| ||||| || || ||||||||||| | ||||| || Sbjct 16305 TTACAGGACGCTGTTGTTACTGTTCCAGCTTACTTCAATGACTCACAGAGGCAAGCAACA 16364 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| ||| |||| ||||||||| | ||||||||||| || || || ||| Sbjct 16365 AAAGATGCTGGTGCAATTTCTGGTCTTAATGTTTTGCGTATTATCAACGAGCCAACAGCT 16424 Query 550511 GCTGCACTTGCATATGGACTTG 550532 ||||| |||| ||||| |||| Sbjct 16425 GCTGCTATTGCTTATGG-CTTG 16445 >seq106 Length=114086 Score = 129 bits (142), Expect = 5e-24 Identities = 172/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 550021 TAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAA 550080 ||||||||||||||| | |||| ||| ||||| || || |||||||| || || || Sbjct 31149 TAGTTGTGTTGGTGTGTATAAAAACGGTCGTGTTGAGATAATAGCCAATGACCAGGGCAA 31090 Query 550081 CAGAACTACTCCATCTTATGTTTCTTTCAC---GGAAA---CTGAACATTTAGTTGGTGA 550134 |||| ||| || || |||||| ||||||| || | ||| | |||| | ||||| Sbjct 31089 TAGAATTACGCCGTCATATGTTGCTTTCACTAGTGACAGCGGTGAGCGTTTAATAGGTGA 31030 Query 550135 TGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTT 550194 || |||||| ||||| ||| |||||| ||||| |||| ||||| |||||||| Sbjct 31029 CGCCGCAAAAAATCAACTTACTATTAATCCCGAAAATACAGTTTTCGATGCCAAACGTTT 30970 Query 550195 AATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| ||| || |||||| |||||||| | |||||||| ||||| ||| Sbjct 30969 GATTGGCAGAGATTATAATGACAGAACTGTTCAAGATGATATGAAAGTGTGGCCCTTC 30912 Score = 113 bits (124), Expect = 4e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 |||||| |||| || |||||||||| ||| ||||| ||| || || | | | Sbjct 30775 CCAGAAGAAATCTCTGCTATGGTTTTGGGGAAGATGAAGGAAATTGCTGAAGCATATTTA 30716 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || |||| || | | | || ||| | || ||||||||||| || ||||| | || || Sbjct 30715 GGAAAAGAGGTAAAGCACGCTGTAGTTACAGTACCAGCATACTTCAATGATGCGCAGCGA 30656 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || ||||||||||| ||||||||| | ||||| | || || || || ||| Sbjct 30655 CAAGCAACAAAAGATGCTGGCACAATTGCTGGATTAAATGTAGTACGGATAATTAACGAA 30596 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| || || |||| ||||| ||||| || Sbjct 30595 CCAACTGCAGCAGCTATTGCCTATGGCCTTGACAA 30561 >seq1440 Length=21489 Score = 95.1 bits (104), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 ||||| ||||||||||||||||||||||| || | || || || || | |||||| Sbjct 6205 ATTGACCAAACACGTGGTTGGTTTTATACTCTTCTTGTTTTGTCTTGTGCATTATTCGAT 6264 Query 368974 AAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAAG 369033 |||| | ||||| |||||||| | ||| |||| ||||||||||||| ||| Sbjct 6265 CGACCGCCATTTAAGAATGTAATTTGCAATGGACTTGTACTTGCATCTGATGGTACAAAA 6324 Query 369034 ATGTCAAAAAGTAAGGGTAATTATTCCGATCC 369065 ||||| ||||| || |||||| | ||||| Sbjct 6325 ATGTCTAAAAGGAAAAAAAATTATCCAGATCC 6356 >seq82 Length=127425 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||||||||| | | |||||| || || ||||| |||||||| ||||| || ||| | Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGT--ACATTCGAGAGTAACAGTTTTACCAGTAA 563452 ||||| || ||||| |||| || | ||| || || |||| |||||||||||| | Sbjct 56293 TTTACATTTTCGATTGTGTCAG-AAGACTCAACA-TCAAGTGTAATAGTTTTACCAGTTA 56350 Query 563453 GAGTTTTAACGAAAATTTGCATA 563475 ||| || || ||||| |||||| Sbjct 56351 AAGTCTTTACAAAAATCTGCATA 56373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029090860985710