Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq82 120 2e-22 >seq82 Length=127425 Score = 120 bits (132), Expect = 2e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||| ||||| || || || || || || ||||||||||||||||| ||||| || ||| Sbjct 56232 ACCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGC 56291 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||||||| |||| | |||||||| | || || ||||| || | ||||| || ||||| Sbjct 56292 TTTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAA 56351 Query 101449 AGTTTTTACAAATATCTGCAT 101469 ||| |||||||| |||||||| Sbjct 56352 AGTCTTTACAAAAATCTGCAT 56372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396259665814803