Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1102 244 7e-59 seq106 114 8e-20 seq194 100 2e-15 seq501 93.3 3e-13 seq1440 89.7 3e-12 seq82 89.7 3e-12 >seq1102 Length=30933 Score = 244 bits (270), Expect = 7e-59 Identities = 503/736 (68%), Gaps = 14/736 (2%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 ||||| | ||||| | |||||||| || |||| | ||| || ||| | ||| | Sbjct 16947 TTGAAATCGATTCGTTGTTTGAAGGCATCGATTTCTACACTAACATCACACGTGCTCGTT 17006 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 ||||||| | | ||||| | || | |||||| || || ||||| ||| | | Sbjct 17007 TTGAAGAATTGAATGCTGATTTATTCCGTTCAACAATGGACCCTGTTGAGAAAGCTTTAC 17066 Query 475668 GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAA 475727 | ||| ||||| | |||||||| || |||||||| |||||| | || || || || || Sbjct 17067 GCGATGCTAAAATGGACAAATCCCAGGTCCATGACATTGTTTTGGTTGGTGGATCTACCC 17126 Query 475728 GAATTCCAAAAATAAGAGAA-ATGCTTTCAT-CATATTTTAATGGTAAAAAGTTAAATGA 475785 | |||||||| | |||| ||||| || | | || | | || || ||||||| | Sbjct 17127 GTATTCCAAAGGTCC-AGAAGATGCTGTCTGACTTCTTCTCA-GGCAAGGAGTTAAACAA 17184 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC 475845 || | || ||||||||||||||||| ||||| || || || || ||||||||||| || Sbjct 17185 GAGCATCAACCCTGATGAAGCTGTTGCTTATGGTGCAGCAGTACAGGCAGCTATTTTGTC 17244 Query 475846 AGGTCAATCAGACGAGAAACTAAATAATA-TTG-TACTTGTTGACGTAACTCCACTTTCA 475903 ||| | | || | ||| || || | ||| | ||| | || || |||||||||| Sbjct 17245 TGGTGA-TAAGTCT-GAAGCTGTTCAAGACTTGCTGCTTTTGGATGTTGCTCCACTTTCG 17302 Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963 | ||| |||| || | ||| || ||||||| ||||||| | |||||||| ||||| Sbjct 17303 CTTGGTATTGAGACTGCTGGTGGCGTTATGACAGCTCTTATTAAGAGAAATACAACTATC 17362 Query 475964 CCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATC 476023 ||| |||| ||| | || | || || || ||||||||| | |||| || Sbjct 17363 CCAACGAAAACATCTCAGACTTTCACTACCTACTCCGATAATCAACCTGGTGTATTGATT 17422 Query 476024 CAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAAT 476083 ||| | | ||| || ||| | | | ||||||||||| ||| ||||| | || | Sbjct 17423 CAAGTTTATGAGGGCGAACGTGCAATGACTAAAGATAACAACTTGCTTGGTAAATTCGAG 17482 Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 || |||||||| ||||| || ||||| ||||| ||||| || || || ||||||||| Sbjct 17483 CTATCTGGTATTCCACCTGCACCAAGAGGTGTTCCACAAATCGAGGTCACGTTTGATATT 17542 Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAAT---CTAGTAACAAGAGTAAA 476200 ||||| ||||| || | || || || || || |||| || |||| | || ||| Sbjct 17543 GATGCCAATGGAATCTTAAACGTGACAGCACAAGACAAATCAACTGGTAAACACAGCAAA 17602 Query 476201 AATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTT 476260 || ||||||||||| | ||| | || | | || ||||| |||||||||| Sbjct 17603 ---ATTACTATTACAAATGACAAGGGTCGTCTTTCCAAGGATGAAATTGAACGTATGGTC 17659 Query 476261 GATGAAGCCAAAGAGT 476276 | ||||| || ||| Sbjct 17660 CAGGAAGCTGAAAAGT 17675 Score = 118 bits (130), Expect = 7e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||||||||| || || ||||| || || | |||||||| |||||||| || || Sbjct 16321 TTACTGTTCCAGCTTACTTCAATGACTCACAGAGGCAAGCAACAAAAGATGCTGGTGCAA 16380 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || | |||||||||||||| |||||||| || || |||||||| || || ||||||||| Sbjct 16381 TTTCTGGTCTTAATGTTTTGCGTATTATCAACGAGCCAACAGCTGCTGCTATTGCTTATG 16440 Query 474864 GTCTTGATAAGAA 474876 | | || ||||| Sbjct 16441 GCTTGGACAAGAA 16453 >seq106 Length=114086 Score = 114 bits (126), Expect = 8e-20 Identities = 176/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| || | | || ||||||||| ||| ||||| | ||| ||||| ||| Sbjct 29481 GAAGGTGAACGACCAATGACAAAAGATAATCACATTCTTGGTAAATTTGATCTTACTGGT 29422 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 ||||| || ||||| | || || || ||||||||||| || ||||| ||||| | |||| Sbjct 29421 ATTCCACCAGCTCCTCGCGGTGTGCCGCAAATTGAAGTAACATTTGAAATTGACGTAAAT 29362 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAA---ATCTAGTAACAAGAGTAAAAATATAACT 476209 ||||||||| ||||||| || ||||| | | | |||||| || || || || Sbjct 29361 GGTATTCTTCATGTTACCGCCGAAGATAAGGGAACAGGCAACAAG---AATAAGATTACA 29305 Query 476210 ATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCC 476269 ||||| || ||| ||| || | |||| | ||| | | ||| || |||| ||| Sbjct 29304 ATTACGAATGATCAGAATAGGTTATCACCAGAAGATATTGAGAGGATGATTAATGATGCC 29245 Query 476270 AAAGAGTTTG 476279 | |||||| Sbjct 29244 GAGAAGTTTG 29235 Score = 102 bits (112), Expect = 5e-16 Identities = 169/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 474359 AGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAAT 474418 |||||||| | ||| | |||| ||| || || ||||| ||||||||||| || ||| Sbjct 31148 AGTTGTGTTGGTGTGTATAAAAACGGTCGTGTTGAGATAATAGCCAATGACCAGGGCAAT 31089 Query 474419 AGAACAACACCATCATATGTTTCTTT---TACTGAAA---CTGAACATCTTATTGGAGAT 474472 |||| || || ||||||||| |||| || ||| | ||| | | | || || || Sbjct 31088 AGAATTACGCCGTCATATGTTGCTTTCACTAGTGACAGCGGTGAGCGTTTAATAGGTGAC 31029 Query 474473 GCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTG 474532 || || ||| ||||| | | |||||| | ||||| |||| ||||| ||| | ||| Sbjct 31028 GCCGCAAAAAATCAACTTACTATTAATCCCGAAAATACAGTTTTCGATGCCAAACGTTTG 30969 Query 474533 ATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAG 474592 ||||| | ||| | |||| | ||||| ||| ||||||| ||||| || ||| Sbjct 30968 ATTGGCAGAGATTATAATGACAGAACTGTTCAAGATGATATGAAAGTGTGGCCCTTCAAG 30909 Query 474593 GTG 474595 ||| Sbjct 30908 GTG 30906 Score = 95.1 bits (104), Expect = 8e-14 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 || ||||||||||||||||| ||||| |||||||| ||||||| | || |||| || Sbjct 29797 AACCCTGATGAAGCTGTTGCCTATGGTGCTGCTGTACAAGCAGGTGTTATATCTGG---- 29742 Query 475853 TCAGACGAGA-AACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 ||| |||| ||| | ||||||| ||| | || || | |||| | | | ||| | Sbjct 29741 --AGAAGAGAGCACT-GGTGATATTGTTCTTTTGGATGTTAATCCATTAACTCTTGGTAT 29685 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCA- 475970 ||| || ||||| || ||||||| || |||||| | ||||| ||||||| | Sbjct 29684 TGAGACTGTTGGTGGCGTTATGACAAAGCTTATTACTCGTAATACCGTTATCCCAACGAA 29625 Query 475971 -AAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCA 476025 || | ||| | | || || || ||||||||||| ||||||| || || || Sbjct 29624 GAAGAGTCAGA--TTTTCTCAACAGCAGCTGATAATCAACCAACTGTTACGATACA 29571 >seq194 Length=96315 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 269357 ATACTTTTCCTAATAGACATTCAATCAATTGTCCAATGGTCATACGTTTTGGCATACAAT 269416 ||||||| || ||||||||||||||| || ||||| ||||||||| ||| | | || Sbjct 39156 ATACTTTGCCCTGTAGACATTCAATCAAGTGACCAATTGTCATACGTGATGGTACAGCAT 39097 Query 269417 TAGGATTAATAATAATATCTGGCACAAGTCCAGATTTAGTAAATGGCATATCT 269469 |||||||||||| |||||||| || ||| |||||||||||||||||| Sbjct 39096 GAGGATTAATAATTATATCTGGAGTAATTCCCTCATTAGTAAATGGCATATCT 39044 >seq501 Length=61181 Score = 93.3 bits (102), Expect = 3e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 817093 TTTAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATC 817152 |||| |||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||| Sbjct 60379 TTTAGTAGATTTTTCGTCACCAAATATTGCTAAGGAGATGCATGTTGGTCACTTGAGATC 60438 Query 817153 TACAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGT 817206 ||| || ||||| || ||||| | ||| |||| | ||||| ||| || Sbjct 60439 TACTATTATTGGAGATGGAATTTGTCGCCTATTAGAATATGTTGGATTTGAGGT 60492 >seq1440 Length=21489 Score = 89.7 bits (98), Expect = 3e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 297442 ATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTAAC 297501 ||||| |||||| | ||||||||||||||| | | ||| | ||| || |||| | Sbjct 6205 ATTGACCAAACACGTGGTTGGTTTTATACTCTTCTTGTTTTGTCTTGTGCATTATTCGAT 6264 Query 297502 AAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAAAA 297561 ||| ||||||| ||||||||| | ||| |||| ||| ||||||| |||| Sbjct 6265 CGACCGCCATTTAAGAATGTAATTTGCAATGGACTTGTACTTGCATCTGATGGTACAAAA 6324 Query 297562 ATGTCAAAAAGTAAAGGTAATTATCCTGATCCAA 297595 ||||| ||||| ||| |||||||| ||||||| Sbjct 6325 ATGTCTAAAAGGAAAAAAAATTATCCAGATCCAA 6358 >seq82 Length=127425 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || |||||||| | ||||| || || || ||||| ||||| |||||||| |||||| | Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 480693 TTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| ||| || || |||| | | || | |||| |||||||||||||| || | Sbjct 56293 TTTACATTTTCGATTGTGTCAGAAGACTCAACAT-CAAGTGTAATAGTTTTACCAGTTAA 56351 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||| || ||||| || Sbjct 56352 AGTCTTTACAAAAATCTG 56369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268012810869092