Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1102 399 3e-106 seq84 132 6e-26 seq82 125 9e-24 seq106 120 4e-22 >seq1102 Length=30933 Score = 399 bits (442), Expect = 3e-106 Identities = 570/793 (72%), Gaps = 16/793 (2%) Strand=Plus/Plus Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||| || |||||||||||||| || || || ||||| || | || || ||||| |||| Sbjct 16947 TTGAAATCGATTCGTTGTTTGAAGGCATCGATTTCTACACTAACATCACACGTGCTCGTT 17006 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 ||||||| || || ||||||| || | ||||| |||||||| ||| | | Sbjct 17007 TTGAAGAATTGAATGCTGATTTATTCCGTTCAACAATGGACCCTGTTGAGAAAGCTTTAC 17066 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 | || || || ||||| || || |||| |||| ||||| | || || ||||| |||| Sbjct 17067 GCGATGCTAAAATGGACAAATCCCAGGTCCATGACATTGTTTTGGTTGGTGGATCTACCC 17126 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 ||||||| ||| | || ||||||| ||| ||||||| || || |||||||| | Sbjct 17127 GTATTCCAAAGGTCCAGAAGATGCTGTCTGACTTCTTCTCAGGCAAGGAGTTAAACAAGA 17186 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 |||||||| |||||||| |||||||||||||| || || ||||| |||||| | || | Sbjct 17187 GCATCAACCCTGATGAAGCTGTTGCTTATGGTGCAGCAGTACAGGCAGCTATTTTGTCTG 17246 Query 196431 GTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 ||| | | | | || ||||| | ||||| | |||||||| || | || || | Sbjct 17247 GTGATAAGTCTGAAGCTGTTCAAGACTTGCTGCTTTTGGATGTTGCTCCACTTTCGCTTG 17306 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 || |||| || || ||||| |||||||| ||||| | || || |||||||| || | Sbjct 17307 GTATTGAGACTGCTGGTGGCGTTATGACAGCTCTTATTAAGAGAAATACAACTATCCCAA 17366 Query 196551 CTAAGAAGGAACAAGTCT---TTTCA--ACGTATTCCGATAATCAACCAGGTGTTCATAT 196605 | || |||| || ||||| || || |||||||||||||| ||||| || Sbjct 17367 CGAA-----AACATCTCAGACTTTCACTACCTACTCCGATAATCAACCTGGTGTATTGAT 17421 Query 196606 TCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCG 196664 |||||| ||||| || ||||| | | || | || |||||| | | ||||| | |||| Sbjct 17422 TCAAGTTTATGAGGGCGAACG-TGCAATGACTAAAGATAACAACTTGCTTGGTAAATTCG 17480 Query 196665 ATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATA 196724 | | | || |||||| ||||||| |||||||||||||| || | || || |||| Sbjct 17481 AGCTATCTGGTATTCCACCTGCACCAAGAGGTGTTCCACAAATCGAGGTCACGTTTGATA 17540 Query 196725 TAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA-TCTGAA 196783 | || || |||||||| ||||||| ||||| | ||||| | |||| ||| | | | Sbjct 17541 TTGATGCCAATGGAATCTTAAACGTGACAGCACAAGACAAATCAACTGGTAAACACAGCA 17600 Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843 || ||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| Sbjct 17601 AA-ATTACTATTACAAATGACAAGGGTCGTCTTTCCAAGGATGAAATTGAACGTATGGTC 17659 Query 196844 CAAGATGCGGAAAAGTACAGGGAAGAAGACGAGGTA-TATGAGAAACAGATGAAAGCTAT 196902 || || || |||||||||| || || || || | | | ||||| || || ||||| Sbjct 17660 CAGGAAGCTGAAAAGTACAAGGCTGATGATGACGCACAAAAAGAAAGAGTTG-CAGCTAA 17718 Query 196903 AAATGATCTAGAA 196915 |||| | ||||| Sbjct 17719 GAATGCTTTAGAA 17731 Score = 118 bits (130), Expect = 1e-21 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 || || ||||| ||||| || |||||||||| ||| ||||| | || || ||||| || Sbjct 16311 GACGCTGTTGTTACTGTTCCAGCTTACTTCAATGACTCACAGAGGCAAGCAACAAAAGAT 16370 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGC 195825 |||| ||| ||| | ||||| || ||| || | |||||||| || |||||||| ||||| Sbjct 16371 GCTGGTGCAATTTCTGGTCTTAA-TGTTTTGCGTATTATCAACGAGCCAACAGCTGCTGC 16429 Query 195826 AATTGCTTATGGTCTGGACAAGAA 195849 ||||||||||| |||||||||| Sbjct 16430 TATTGCTTATGGCTTGGACAAGAA 16453 >seq84 Length=125161 Score = 132 bits (146), Expect = 6e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || |||||||| | || || ||||| || ||||| || || ||||| ||| Sbjct 124901 ATGCAAATATTCGTGAAAACATTGACAGGCAAAACAATTACCCTTGATGTCGAGTCTTCA 124960 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || ||| | ||||||||||||||||| ||||| || || || || || ||| Sbjct 124961 GACACAATTGAGAACGTGAAAGCCAAGATTCAAGACAAGGAGGGAATCCCGCCAGAGCAG 125020 Query 171982 CAACGACTTATTTTTGCTGGT 172002 ||| | || |||||||||||| Sbjct 125021 CAAAGGCTCATTTTTGCTGGT 125041 >seq82 Length=127425 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || ||||| || || | ||||| |||||||| || || || |||||||| || Sbjct 56373 TATGCAGATTTTTGTAAAGACTTTAACTGGTAAAACTATTACACTTGATGTTGAGTCTTC 56314 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||||||||| || | ||||| ||||| ||||| || ||||||||||| || || || Sbjct 56313 TGACACAATCGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCGCCAGACCA 56254 Query 171981 GCAACGACTTATTTTTGCTGGT 172002 |||||| | |||||||| ||| Sbjct 56253 GCAACGGTTAATTTTTGCCGGT 56232 >seq106 Length=114086 Score = 120 bits (132), Expect = 4e-22 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCT 195685 || ||||| |||||||| || ||||||| ||| ||||||||||| | ||| ||| | Sbjct 30781 TTCGCTCCAGAAGAAATCTCTGCTATGGTTTTGGGGAAGATGAAGGAAATTGCTGAAGCA 30722 Query 195686 TTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCA 195745 | | || ||| || || | || || || || ||||| || ||||||| |||| | Sbjct 30721 TATTTAGGAAAAGAGGTAAAGCACGCTGTAGTTACAGTACCAGCATACTTCAATGATGCG 30662 Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTAT 195804 || ||||| || ||||| || |||| | ||||| || |||| ||| || | || || Sbjct 30661 CAGCGACAAGCAACAAAAGATGCTGGCACAATTGCTGGATTAAA-TGTAGTACGGATAAT 30603 Query 195805 CAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || |||||||| || || || ||||| ||||| || |||||||| Sbjct 30602 TAACGAACCAACTGCAGCAGCTATTGCCTATGGCCTTGACAAGAA 30558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657830501896880