Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq82 87.8 3e-12 seq84 84.2 3e-11 >seq82 Length=127425 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || ||||| |||||||||||| | || || || |||| Sbjct 56372 ATGCAGATTTTTGTAAAGACTTTAACTGGTAAAACTATTACACTTGATGTTGAGTCTTCT 56313 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| || || ||||| ||||||||||| || ||||| || Sbjct 56312 GACACAATCGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCGCCAGACCAG 56253 Query 155943 CAAAGATTGATTTATGCCGGT 155963 ||| | || |||| ||||||| Sbjct 56252 CAACGGTTAATTTTTGCCGGT 56232 >seq84 Length=125161 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||||||||| || ||||| ||||| | || ||||| ||| Sbjct 124901 ATGCAAATATTCGTGAAAACATTGACAGGCAAAACAATTACCCTTGATGTCGAGTCTTCA 124960 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| || || ||||| || || || || || ||||| || Sbjct 124961 GACACAATTGAGAACGTGAAAGCCAAGATTCAAGACAAGGAGGGAATCCCGCCAGAGCAG 125020 Query 155943 CAAAGATTGATTTATGCCGGT 155963 ||||| | |||| ||| ||| Sbjct 125021 CAAAGGCTCATTTTTGCTGGT 125041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731836513356400