Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq82 96.9 6e-15 seq84 91.5 3e-13 >seq82 Length=127425 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||||||||| | || ||||| || || || |||||||| ||||| || || Sbjct 56232 ACCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGC 56291 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||||||||| || || || || || || || || || ||||| |||||||||||||| Sbjct 56292 TTTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAA 56351 Query 172049 TGTTTTAATGAATATCTGCAT 172069 || || | || |||||||| Sbjct 56352 AGTCTTTACAAAAATCTGCAT 56372 >seq84 Length=125161 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 |||||||||||| | || || || || || || ||||| || || ||||| || || Sbjct 125041 ACCAGCAAAAATGAGCCTTTGCTGCTCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGC 124982 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| || || || || ||||| || || || || || ||||| ||||| || || || Sbjct 124981 TTTCACGTTCTCAATTGTGTCTGAAGACTCGACATCAAGGGTAATTGTTTTGCCTGTCAA 124922 Query 172049 TGTTTTAATGAATATCTGCATTTTATTA 172076 |||||| | |||||| |||||||| ||| Sbjct 124921 TGTTTTCACGAATATTTGCATTTTGTTA 124894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905092112218200