Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq371 109 2e-18 >seq371 Length=70297 Score = 109 bits (120), Expect = 2e-18 Identities = 108/139 (78%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| | ||| ||||||||| | |||||||| ||| | | ||||| ||| | Sbjct 55177 AATTTCTTTTAAACGCGGAACACCAAGTGTTACGTT---CTTTGCAGATACACCGGCATA 55233 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||| || ||||| | |||||| | ||| ||||| | |||||||||||||| | Sbjct 55234 ATGGAAAGTGTTTAGAGTCATTTGAGTTGCTGGTTCACCTAAACTTTGTGCCGCAAGCGG 55293 Query 301935 ACCAACCATTTCTCCTGGT 301953 ||| ||||||||||| ||| Sbjct 55294 ACCGACCATTTCTCCAGGT 55312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471744451125223