Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1315 105 1e-16 seq1654 102 1e-15 >seq1315 Length=24623 Score = 105 bits (116), Expect = 1e-16 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||||||||| |||||| | || || || || | | Sbjct 16944 TGTACTTGGTTACAGCCTTTGTGCCCTCTGAGACAGCGTGCTTAGCAAGCTCTCCCGGTA 17003 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGT 1485587 || || || || || ||||| ||||||| ||| ||| ||| | || ||||| || Sbjct 17004 GAATAAGCCGGACAGCAGTCTGTATCTCGC--GTGACGAAATTGTCGATCGTTTGTT-GT 17060 Query 1485588 GC-GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | | ||||| | || || |||| | || || |||| | ||||| |||||||||| Sbjct 17061 ACTGTGCCAGTCTGCTAGCTTCGGCTGCAATACGTTCGAAAACATCGTTAACAAACGAGT 17120 Query 1485647 TCATGATCGACAT 1485659 ||||||||||||| Sbjct 17121 TCATGATCGACAT 17133 >seq1654 Length=17249 Score = 102 bits (112), Expect = 1e-15 Identities = 180/260 (69%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || || || || ||||| || |||||| | |||| ||| ||| ||| Sbjct 600 TGTACTTGGTGACCGCTTTCGTGCCTTCTGAAACAGCGTGCTTTGCCAATTCACCGGGCA 659 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||| ||||| || || || || ||||| | |||||| || ||||| || | Sbjct 660 ATATCAATCGCACAGCAGTTTGAATTTCGCGAGACGAGATCGTTGACCGTTTGTT-GTAC 718 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||| || || | ||| || | | || | |||| | |||||||| || |||| Sbjct 719 TGCGCTAGACGACTGGCTTCAGCTGCAATTCTTTCGAAAACATCGTTGACGAAACTGTTC 778 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | ||| |||||||| || || ||||| ||||| | ||| | Sbjct 779 ATGATTGACATGGCTTTCGATGAGATGCCGGTATCCGGATGCACTTGCTTCAACACTCGG 838 Query 1485709 TAAACAAAGGACGAGTACGA 1485728 || ||| || || ||||| Sbjct 839 TAGACATAGACTGAATACGA 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915833773077881