Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1102 233 1e-55 seq106 122 7e-22 seq371 104 2e-16 >seq1102 Length=30933 Score = 233 bits (258), Expect = 1e-55 Identities = 402/576 (70%), Gaps = 6/576 (1%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||||||||| || || ||| |||||||| || || ||||| || | Sbjct 17617 ATTTGTAATAGTAATTTTGCTGTGTTTACCAGTTGATTTGTCTTGTGCTGTCACGTTTAA 17558 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 || ||||||||||| | |||||| ||||| || ||||| || || ||||| | ||||| Sbjct 17557 GATTCCATTGGCATCAATATCAAACGTGACCTCGATTTGTGGAACACCTCTTGGTGCAGG 17498 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||| || || | | ||| | || || || ||||||||||| | | ||||| Sbjct 17497 TGGAATACCAGATAGCTCGAATTTACCAAGCAAGTTGTTATCTTTAGTCATTGCACGTTC 17438 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||| ||| ||| || || ||| ||||||||| || || || || || | ||| Sbjct 17437 GCCCTCATAAACTTGAATCAATACACCAGGTTGATTATCGGAGTAGGTAGTGAA-AGTCT 17379 Query 281620 G-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | ||| |||| || || ||||| ||||| | ||||| | ||||||| ||||||| Sbjct 17378 GAGATGTTTTCGTTGGGATAGTTGTATTTCTCTTAATAAGAGCTGTCATAACGCCACCAG 17319 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || | |||||| ||||| |||| ||||| | || | | | ||||| || Sbjct 17318 CAGTCTCAATACCAAGCGAAAGTGGAGCAACATCCAAAAGCAGCAAGTCTTGAACAGCTT 17259 Query 281739 CATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 || | | |||| |||| ||||||||| || | || |||||||| |||||||||||| Sbjct 17258 CAGACTTATCACCAGACAA-AATAGCTGCCTGTACTGCTGCACCATAAGCAACAGCTTCA 17200 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT- 281856 ||||| || | | | |||| | || || ||| || | || || | | ||| Sbjct 17199 TCAGGGTTGATGCTCTTGTTTAACTCCTTGCCTGAGAAGAAGTCAGACAGCA-TCTTCTG 17141 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 ||||| |||||||| | ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 17140 GACCTTTGGAATACGGGTAGATCCACCAACCAAAACAATGTCATGGACCTGGGATTTGTC 17081 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 281952 || ||| | ||| |||| |||| ||||| || || Sbjct 17080 CATTTTAGCATCGCGTAAAGCTTTCTCAACAGGGTC 17045 Score = 120 bits (132), Expect = 2e-21 Identities = 109/136 (80%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| |||| ||||||||| ||||| || || ||||| | |||||||||||||| Sbjct 16445 CAAG-CCATAAGCAATAGCAGCAGCTGTTGGCTCGTTGATAATACGCAAAACATTAAGAC 16387 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 ||| |||| || |||||||| || ||||| || ||||| || || || || || |||| Sbjct 16386 CAGAAATTGCACCAGCATCTTTTGTTGCTTGCCTCTGTGAGTCATTGAAGTAAGCTGGAA 16327 Query 282459 CAGTAATAACGGCATC 282474 |||||| ||| || || Sbjct 16326 CAGTAACAACAGCGTC 16311 >seq106 Length=114086 Score = 122 bits (134), Expect = 7e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||| ||||| |||| ||| || ||||||||||| ||||| || | | ||| Sbjct 30558 TTCTTGTCAAGGCCATAGGCAATAGCTGCTGCAGTTGGTTCGTTAATTATCCGTACTACA 30617 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | ||||||||| | || |||||||| || ||||||| || | ||| || || ||| Sbjct 30618 TTTAATCCAGCAATTGTGCCAGCATCTTTTGTTGCTTGTCGCTGCGCATCATTGAAGTAT 30677 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || |||| || || | |||| |||||||| | ||| || || ||| Sbjct 30678 GCTGGTACTGTAACTACAGCGTGCTTTACCTCTTTTCCTAAATATGCTTCAGCAATTTCC 30737 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 ||||| || | |||| ||| | || |||| |||||||| Sbjct 30738 TTCATCTTCCCCAAAACCATAGCAGAGATTTCTTCTGGAG 30777 Score = 120 bits (132), Expect = 2e-21 Identities = 175/246 (71%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 || || || ||||| ||||||||| ||||||| || ||||||| ||||||| ||| Sbjct 30907 ACCTTGAAGGGCCACACTTTCATATCATCTTGAACAGTTCTGTCATTATAATCTCTGCCA 30966 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || || ||||| ||||| |||| ||||| ||||||| | | ||||| ||| || Sbjct 30967 ATCAAACGTTTGGCATCGAAAACTGTATTTTCGGGATTAATAGTAAGTTGATTTTTTGCG 31026 Query 282734 GCATCTCCAATCAGATGTTC-----TGTCTCT-GTAAATGAAACATATGATGGAGTTGTG 282787 || || || || | | | || |||| || || || | ||||||||| || || | Sbjct 31027 GCGTCACCTATTAAACGCTCACCGCTGTCACTAGTGAAAGCAACATATGACGGCGTAATT 31086 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 | ||| || || ||||| || || || ||||| ||| |||| | ||||| |||||| Sbjct 31087 CTATTGCCCTGGTCATTGGCTATTATCTCAACACGACCGTTTTTATACACACCAACACAA 31146 Query 282848 CTAAAA 282853 |||||| Sbjct 31147 CTAAAA 31152 Score = 113 bits (124), Expect = 3e-19 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 281337 TAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAAT-- 281394 ||||||| |||||||| | ||| || || || ||| ||| ||||| ||||| Sbjct 29253 TAATCATCCTCTCAATATCTTCTGGTGATAACCTATTCTGATCATTCGTAATTGTAATCT 29312 Query 281395 -ATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCAT 281453 ||||||| ||| |||| ||||| |||| || |||| |||||||||||| | | Sbjct 29313 TATTCTTG---TTGCCTGTTCCCTTATCTTCGGCGGTAACATGAAGAATACCATTTACGT 29369 Query 281454 CCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCA 281513 | | |||||||| ||||||||||| || || || | |||| ||||| || || | Sbjct 29370 CAATTTCAAATGTTACTTCAATTTGCGGCACACCGCGAGGAGCTGGTGGAATACCAGTAA 29429 Query 281514 AATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 281570 || |||| | || ||| | | ||||||||| || | | ||||||||| ||| ||| Sbjct 29430 GATCAAATTTACCAAGAATGTGATTATCTTTTGTCATTGGTCGTTCACCTTCGTAAA 29486 Score = 96.9 bits (106), Expect = 3e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || |||| |||||||||||||||||| |||||||| | |||| ||| || ||| Sbjct 30570 CCATAGGCAATAGCTGCTGCAGTTGGTTCGTTAATTATCCGTACTACATTTAATCCAGCA 30629 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 ||| | ||| ||| |||||||||| ||| || ||||| || ||||||||||| ||| Sbjct 30630 ATTGTGCCAGCATCTTTTGTTGCTTGTCGCTGCGCATCATTGAAGTATGCTGGTACTGTA 30689 Query 86239 A 86239 | Sbjct 30690 A 30690 >seq371 Length=70297 Score = 104 bits (114), Expect = 2e-16 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 432264 AAATCAATGTCTGAAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGA 432323 |||||||| || | || | ||| ||||||||||| |||||||| ||||||||||| Sbjct 58940 AAATCAATCAAACAACGTTTAAAAGGAAAAGAAGGTCGCATTAGAGGGAATTTGATGGGG 58881 Query 432324 AAGCGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAAT 432383 || ||||| ||| | || |||||||| |||||||| | ||||| ||| | || | || Sbjct 58880 AAACGTGTTGATTTTTCAGCACGTACTGTTATTACGCCAGATCCAAATTTACCTATAGAT 58821 Query 432384 GAAGTTGGTGTTCCTCTCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAA 432443 | ||||| ||| | |||||| | || | |||||| |||||||| ||| | Sbjct 58820 ACTATCGGTGTGCCTAGAACTATTGCTCAGAACATGACTTTTCCGGAAATTGTTACACCA 58761 Query 432444 CATAATATTGAT 432455 ||| |||||| Sbjct 58760 TTTAACATTGAT 58749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740439957492654