Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq84 105 1e-17 seq82 105 1e-17 seq715 84.2 4e-11 >seq84 Length=125161 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || ||||| || ||||| || ||||| ||||| ||||||||||| ||| Sbjct 125040 CCAGCAAAAATGAGCCTTTGCTGCTCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 124981 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || || || || || || | || || || ||||||||||| Sbjct 124980 TTCACGTTCTCAATTGTGTCTGAAGACTCGACATCAAGGGTAATTGTTTTGCCTGTCAAT 124921 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || ||||| |||||| Sbjct 124920 GTTTTCACGAATATTTGCATT 124900 >seq82 Length=127425 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| |||| | ||| || ||||| || || ||||| || ||||| ||||||||| Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || || ||| || || || || | || || || || || || || Sbjct 56293 TTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAAA 56352 Query 82791 GTCTTTACAAATATCTGCATTAT 82813 ||||||||||| |||||||| || Sbjct 56353 GTCTTTACAAAAATCTGCATAAT 56375 >seq715 Length=47073 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 50770 CCGAAATTAAATAATAGAACACTTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCA 50829 |||||||||||||| || | | | | |||| |||||||||||| || |||||||| Sbjct 32097 CCGAAATTAAATAACAGTATTTTCAATTCGCCTCGATAGTCTGAGTCGATAACACCAGCT 32038 Query 50830 CCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTAT 50889 || ||||| ||||||| || ||| || || || ||||| || |||| || || || Sbjct 32037 CCAACGTCAATAAAATTTTTGACAGCTAGACCCGACCTAGGTGCAATTCGGCCATAACAT 31978 Query 50890 CCATTAGGTAT 50900 |||| ||||| Sbjct 31977 CCATCTGGTAT 31967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981778403494981