Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1315 86.0 9e-11 >seq1315 Length=24623 Score = 86.0 bits (94), Expect = 9e-11 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| ||||| | |||| || || | |||| Sbjct 17139 AAGGCAATGTCGATCATGAACTCGTTTGTTAACGATGTTTTCGAACGTATTGCAGCCGAA 17080 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGA 725082 || | | ||||| | | |||||| || | ||| ||| || |||||||| |||| Sbjct 17079 GCTAGCAGACTGGCACAGTACAACAAACGATCGACAATTTCGTCA--CGCGAGATACAGA 17022 Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || || || || | | || || || || | |||||| ||||| |||||||| Sbjct 17021 CTGCTGTCCGGCTTATTCTACCGGGAGAGCTTGCTAAGCACGCTGTCTCAGAGGGCAC 16964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177437063320398