Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq82 109 6e-19 seq84 93.3 4e-14 >seq82 Length=127425 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| || || ||||| || ||||| ||||||||||| ||||| || ||| | Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| || || || || || || ||||| |||||||| |||||| Sbjct 56293 TTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAAA 56352 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| Sbjct 56353 GTCTTTACAAAAATCTGCAT 56372 >seq84 Length=125161 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | | ||||| || ||||| || || || || |||||||| || | Sbjct 125040 CCAGCAAAAATGAGCCTTTGCTGCTCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 124981 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| || || || || || || ||||| ||||| || || || Sbjct 124980 TTCACGTTCTCAATTGTGTCTGAAGACTCGACATCAAGGGTAATTGTTTTGCCTGTCAAT 124921 Query 134694 GTTTTAACGAAAATTTGCATTTTGTT 134719 ||||| ||||| |||||||||||||| Sbjct 124920 GTTTTCACGAATATTTGCATTTTGTT 124895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505373894495080