Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq263 87.8 2e-12 >seq263 Length=84048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 69087 AAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 |||||||||||| | |||||| || |||||||| || |||| ||| | | | ||||| Sbjct 19067 AAATGCATCTGCAAGTCCCTGCACACCAATACCAATTGGTCGATGACGCATGTTTGAGTG 19126 Query 69147 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || || ||| |||||||||||||| || ||| || |||||||| | ||| Sbjct 19127 TTTAGTTTCAGGAATAGGATAATAGTTGCCATCAATTATTTTATTCAAATT 19177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| ||||| | |||||| ||| || ||||| || |||| |||||||||||||| Sbjct 19744 TTCAAATTCCTGGCCCCAACAATCCGGTAACCCAGGGCACTCATCAGGACACATCAATGA 19803 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | ||||||| |||||||||| |||||||| ||| || | ||| | ||| | || Sbjct 19804 CCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACCCACAAAGCAAAGAA 19863 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | ||| || || | | || || | || |||| || | | |||||| | Sbjct 19864 TAAATCCCTTGTACGTTCCTCATCGGTACCAATATTATTACGCATTAGTAAAAACTCAAA 19923 Query 69696 AATATCAGAATGCCATGGTTC 69716 |||||||| |||||||| || Sbjct 19924 AATATCAGCGTGCCATGGCTC 19944 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||| ||| |||||||||||| |||||| ||||| | ||||| |||||| || Sbjct 24609 GTATACAGCTTTTCGAATTCATCGCCCCAACTATCATAAAGACCAGGGCATTCAGCAGGG 24668 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||||| || ||||| | | ||| ||| ||||||| ||||| || ||||| || | ||| Sbjct 24669 CACATAAACGACCATATAGCATTATCTCTAACTCGCTTCATGAAAAGATCAGGCACCCA 24727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686875493509560