Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1102 311 3e-79 seq106 185 3e-41 seq409 122 3e-22 seq82 118 3e-21 seq975 100 9e-16 seq263 96.9 1e-14 seq1 93.3 1e-13 seq194 89.7 2e-12 seq32 84.2 7e-11 >seq1102 Length=30933 Score = 311 bits (344), Expect = 3e-79 Identities = 500/712 (70%), Gaps = 16/712 (2%) Strand=Plus/Plus Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 |||||||| ||||| | ||| |||| ||||||| | || ||||||||||| Sbjct 16946 ATTGAAATCGATTCGTTGTTTGAAGGCATCGATTTCTACACTAACATCACACGTGCTCGT 17005 Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 ||||||||||| | ||| ||| | || | |||||||||| ||||| || |||| | Sbjct 17006 TTTGAAGAATT--GAATGCTGATTTATTCCGTTCAACAATGGACCCTGTTGAGAAAGCTT 17063 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 || ||||| |||||| |||| ||| | |||| | ||||| |||||||| |||| Sbjct 17064 TACGCGATGCTAAAATGGACAAATCCCAGGTCCATGACATTGTTTTGGTTGGTGGATCTA 17123 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT--- 350264 | ||||||||||| || || || | || ||||| || || ||||| || || Sbjct 17124 CCCGTATTCCAAAGGTCCAGAAGATGCTGTCTGACTTCTTCTCAGGCAAGGAG--TTAAA 17181 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTT 350324 | ||| || | || || |||||||||||||| |||||||| || || |||||| |||||| Sbjct 17182 CAAGAGCA-TCAACCCTGATGAAGCTGTTGCTTATGGTGCAGCAGTACAGGCAGCTATTT 17240 Query 350325 TATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTA---GATGTAACTCCAC 350381 | ||||| ||||| ||| || || | | || || || ||||| |||||| Sbjct 17241 TGTCTGGTGATAAG---TCTGAAGCTGTTCAAGACTTGCTGCTTTTGGATGTTGCTCCAC 17297 Query 350382 TTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTA 350441 |||||||||| | || ||| |||||| || ||||| | ||||||| ||||||| | Sbjct 17298 TTTCGCTTGGTATTGAGACTGCTGGTGGCGTTATGACAGCTCTTATTAAGAGAAATACAA 17357 Query 350442 CTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAA 350501 || | || || |||| || || ||||| |||| | | |||||||| || | ||| Sbjct 17358 CTATCCCAACGAAAACATCTCAGACTTTCACTACCTACTCCGATAATCAACCTGGTGTAT 17417 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 |||||||| | ||| || |||||||| ||||||||||| || ||||| ||| Sbjct 17418 TGATTCAAGTTTATGAGGGCGAACGTGCAATGACTAAAGATAACAACTTGCTTGGTAAAT 17477 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 | ||| || |||||||| || ||||| ||||| || || || ||| | || | Sbjct 17478 TCGAGCTATCTGGTATTCCACCTGCACCAAGAGGTGTTCCACAAATCGAGGTCACGTTTG 17537 Query 350622 ATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAAAAGTA 350681 |||||||| | ||||| || ||||| || || ||| || ||||||| ||||||| | Sbjct 17538 ATATTGATGCCAATGGAATCTTAAACGTGACAGCACAAGACAAATCAACTGGTAAACACA 17597 Query 350682 GTAAGGTAGAAATTACTAATGATAAATCTAGACTTTCAAAAGAAGATATTGA 350733 | || | ||||| ||||| || | | ||||| || || || ||||| Sbjct 17598 GCAAAATTACTATTACAAATGACAAGGGTCGTCTTTCCAAGGATGAAATTGA 17649 Score = 185 bits (204), Expect = 3e-41 Identities = 437/655 (67%), Gaps = 4/655 (1%) Strand=Plus/Minus Query 182808 TACTTTTCAGCATCCATTGTCATTCTTTCTATTTCATCTTTAGAAAGATGACCTGCATCA 182867 ||||||||||| ||| ||| | ||| |||||||| || |||||| |||| ||| Sbjct 17676 TACTTTTCAGCTTCCTGGACCATACGTTCAATTTCATCCTTGGAAAGACGACCCTTGTCA 17617 Query 182868 TTTGTAATTACTACATTACTAGTTACTCCAGTTGATTTTTCAAGTGCGCTAACATTTAAA 182927 |||||||| | || || | ||||||||||| || |||| | || ||||| Sbjct 17616 TTTGTAATAGTAATTTTGCTGTGTTTACCAGTTGATTTGTCTTGTGCTGTCACGTTTAAG 17557 Query 182928 ATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGT 182987 || ||||| | |||| |||||| | || || || ||||||||||||| ||| ||| Sbjct 17556 ATTCCATTGGCATCAATATCAAACGTGACCTCGATTTGTGGAACACCTCTTGGTGCAGGT 17497 Query 182988 GGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTTGCTCTCTCG 183047 ||||| |||| || |||| ||| | || ||||||||||| |||| | ||| Sbjct 17496 GGAATACCAGATAGCTCGAATTTACCAAGCAAGTTGTTATCTTTAGTCATTGCACGTTCG 17437 Query 183048 CCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACTTGC 183107 || ||||| |||||||| || | || |||||||| || |||| ||| || Sbjct 17436 CCCTCATAAACTTGAATCAATACACCAGGTTGATTATCGGAGTAGGTAGTGAAAGTCTGA 17377 Query 183108 TTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTACTTCTCTGGCA 183167 | | || | || ||||||| ||||| | || || | ||||| || | | ||| Sbjct 17376 GATGTTTTCGTTGGGATAGTTGTATTTCTCTTAATAAGAGCTGTCATAACGCCACCAGCA 17317 Query 183168 GTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATC-TGATGTTTTATC 183226 || || | || | || | ||| || ||||| | | | || || ||| | || Sbjct 17316 GTCTCAATACCAAGCGAAAGTGGAGCAACATCCAAAAGCAGCAAGTCTTGAACAGCT-TC 17258 Query 183227 TGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATC 183286 || ||| | || ||||| || || || || ||||||||||| |||||||||||||| Sbjct 17257 AGACTTATCACCAGACAAAATAGCTGCCTGTACTGCTGCACCATAAGCAACAGCTTCATC 17198 Query 183287 TGGGTTAATTGAACGAG-ATAATTCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAA 183345 ||||| | || | | ||| || ||||| || || || || ||||| | || | Sbjct 17197 AGGGTTGA-TGCTCTTGTTTAACTCCTTGCCTGAGAAGAAGTCAGACAGCATCTTCTGGA 17139 Query 183346 TTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGATATTACTTTTACTAA 183405 |||||||| | || || ||||| || || || | |||| || | ||| | Sbjct 17138 CCTTTGGAATACGGGTAGATCCACCAACCAAAACAATGTCATGGACCTGGGATTTGTCCA 17079 Query 183406 TTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATC 183460 ||| | ||| |||| |||| |||||||||||||| ||| | |||||||| Sbjct 17078 TTTTAGCATCGCGTAAAGCTTTCTCAACAGGGTCCATTGTTGAACGGAATAAATC 17024 Score = 104 bits (114), Expect = 7e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 349759 AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 ||||| |||| |||| ||||||||||| |||||||| || |||||||| ||| | || || Sbjct 16532 AGAAAGAAATGTTCTCATTTTTGATTTGGGTGGTGGCACATTTGATGTGTCAATTCTTAC 16591 Query 349819 ACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 |||| || || || |||||||| || |||| ||||| || || |||||||| || Sbjct 16592 CATTGAGGATGGCATCTTTGAAGTAAAGTCAACAGCTGGAGACACTCATCTTGGCGG 16648 Score = 87.8 bits (96), Expect = 5e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 349394 AAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTT 349453 || || |||||||| || | ||| |||| | || ||||||||| | ||||||| Sbjct 16024 AAACGTCTTATTGGACGACGCTTTGATGACCCAGCTGTCCAATCTGATATGAAACATTGG 16083 Query 349454 CCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGT 349513 || |||| || || || |||| ||||||| || | ||||||||| || Sbjct 16084 CCGTTTAAAGTAGTAAGTGCTGAAGGTGGCAAACCAAAAGTTCAAGTTGAATATCGTGGG 16143 Query 349514 GAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAA 349573 ||| | || |||| ||| |||||| ||||||| |||||| | | |||||||||||| Sbjct 16144 GAAAATAAGACATTTACACCTGAAGAAGTTTCATCTATGGTTCTCGGCAAAATGAAGGAA 16203 Query 349574 ATTGCTGAAGC 349584 | |||||||| Sbjct 16204 ACAGCTGAAGC 16214 Score = 86.0 bits (94), Expect = 2e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 183692 ACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATT 183751 ||| || | ||| || || ||||| || | || |||||||| || || || ||||| | Sbjct 16649 ACCGCCAAGATGAGTGTCTCCAGCTGTTGACTTTACTTCAAAGATGCCATCCTCAATGGT 16590 Query 183752 TAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 | |||||| ||||||||||| |||||||||||||||||| Sbjct 16589 AAGAATTGACACATCAAATGTGCCACCACCCAAATCAAAA 16550 >seq106 Length=114086 Score = 185 bits (204), Expect = 3e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || |||||||| || | |||||||| | || ||||||||||||||||||||||||||| Sbjct 30775 CCAGAAGAAATCTCTGCTATGGTTTTGGGGAAGATGAAGGAAATTGCTGAAGCATATTTA 30716 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || |||| | ||||| |||| |||||||| || || |||||||| ||||| Sbjct 30715 GGAAAAGAGGTAAAGCACGCTGTAGTTACAGTACCAGCATACTTCAATGATGCGCAGCGA 30656 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 ||||||||||||||||||| ||||| || |||||||| || | || ||||| ||| Sbjct 30655 CAAGCAACAAAAGATGCTGGCACAATTGCTGGATTAAATGTAGTACGGATAATTAACGAA 30596 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 || ||||| ||||| ||||| ||||| ||||| || Sbjct 30595 CCAACTGCAGCAGCTATTGCCTATGGCCTTGACAA 30561 Score = 105 bits (116), Expect = 2e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 183655 TAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAG 183714 ||||||| | || || | |||| ||||||||||||||||| | ||||||||| || Sbjct 30302 TAATAAAGTATTCAATCACTCTTTGGTCAAAATCTTCACCACCAAGATGTGTATCACCGT 30361 Query 183715 CAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTAC 183774 ||||||| |||||||| | |||| ||||| |||| ||||| ||||||||||| | Sbjct 30362 TAGTAGCTAACACTTCAAACACGCCGTTATCAATGGTTAACATTGACACATCAAATGTGC 30421 Query 183775 CACCACCCAAATCAAA 183790 ||||||| | ||| || Sbjct 30422 CACCACCAAGATCGAA 30437 Score = 105 bits (116), Expect = 2e-17 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 349231 TTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAG 349290 |||||||| ||| | |||| | |||||| || ||||| || ||||| || || || || Sbjct 31146 TTGTGTTGGTGTGTATAAAAACGGTCGTGTTGAGATAATAGCCAATGACCAGGGCAATAG 31087 Query 349291 AACAACGCCATCATACGTTGCATTTACC---GAAAC---TGAGCGTATGATTGGTGATTC 349344 || ||||| ||||| ||||| || || || | ||||||| | || ||||| | Sbjct 31086 AATTACGCCGTCATATGTTGCTTTCACTAGTGACAGCGGTGAGCGTTTAATAGGTGACGC 31027 Query 349345 TGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTAT 349404 |||||||||||| | || |||||| ||||||| ||||| ||||| || || | || Sbjct 31026 CGCAAAAAATCAACTTACTATTAATCCCGAAAATACAGTTTTCGATGCCAAACGTTTGAT 30967 Query 349405 TGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAA 349447 ||| ||| || | ||||| | || ||| |||| | ||| Sbjct 30966 TGGCAGAGATTATAATGACAGAACTGTTCAAGATGATATGAAA 30924 Score = 100 bits (110), Expect = 9e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||||||||| | || ||| | |||||||| || |||||||| ||| | |||| Sbjct 30455 GAAAGGAATATTCTTGTATTCGATCTTGGTGGTGGCACATTTGATGTGTCAATGTTAACC 30396 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 |||| | || | |||||||| ||| ||| |||||||||||||||||||| ||| Sbjct 30395 ATTGATAACGGCGTGTTTGAAGTGTTAGCTACTAACGGTGATACACATCTTGGTGGTGAA 30336 Query 349880 GATTTTGA 349887 |||||||| Sbjct 30335 GATTTTGA 30328 Score = 98.7 bits (108), Expect = 3e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 ||||||||||| | || ||||||||| | | ||||| ||||| || | || Sbjct 29481 GAAGGTGAACGACCAATGACAAAAGATAATCACATTCTTGGTAAATTTGATCTTACTGGT 29422 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 ||||||||| ||| | || || || || |||||||| | || || ||||| |||| Sbjct 29421 ATTCCACCAGCTCCTCGCGGTGTGCCGCAAATTGAAGTAACATTTGAAATTGACGTAAAT 29362 Query 350636 GGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAAAAGTAGTAAGGTAGAAATT 350695 |||||| | |||||||||| | || || || || || | | |||| | |||| Sbjct 29361 GGTATTCTTCATGTTACCGCCGAAGATAAGGGAACAGGCAACAAGAATAAGATTACAATT 29302 Query 350696 ACTAATGATAAATCTAGACTTTCAAAAGAAGATATTGAGAAAATGACACAAGATGCCGAA 350755 || |||||| | ||| | ||| |||||||||||||| |||| | |||||||| Sbjct 29301 ACGAATGATCAGAATAGGTTATCACCAGAAGATATTGAGAGGATGATTAATGATGCCGAG 29242 Query 350756 TCATATGCTAAGGAAGA 350772 | |||| | ||||| Sbjct 29241 AAGTTTGCTGATGAAGA 29225 Score = 89.7 bits (98), Expect = 2e-12 Identities = 165/241 (68%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGA 350332 ||||| || |||||||||||||| |||||||||||||| || ||| | || ||||||| Sbjct 29800 ATTAACCCTGATGAAGCTGTTGCCTATGGTGCTGCTGTACAAGCAGGTGTTATATCTGG- 29742 Query 350333 AATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGA 350392 | ||||| | | || |||| | | || | ||||| | |||| | | ||||| Sbjct 29741 -AGAAGAG----AGCACTGGTGATATTGTTCTTTTGGATGTTAATCCATTAACTCTTGGT 29687 Query 350393 TTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACA 350452 | || ||| ||||| || ||||| |||||| || | |||| | | || || Sbjct 29686 ATTGAGACTGTTGGTGGCGTTATGACAAAGCTTATTACTCGTAATACCGTTATCCCAACG 29627 Query 350453 AAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTA 350512 || ||| || | ||| || ||| || |||||||| ||| | || || || || ||| Sbjct 29626 AAGAAGAGTCAGATTTTCTCAACAGCAGCTGATAATCAACCAACTGTTACGATACAGGTA 29567 Query 350513 T 350513 | Sbjct 29566 T 29566 >seq409 Length=67552 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 130724 ATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTTCGC 130783 |||| | |||| | ||||| | ||||||||| |||||||| |||||||||||||| || Sbjct 43696 ATGTAAACCTAAATTACCTCCTATCATAACAAAGTCAGCTCCAGCTCCAAATGCTTTTGC 43637 Query 130784 AATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATGTGC 130843 || ||| || || |||| || |||||| || | ||| ||||| | ||||| || Sbjct 43636 AACATCGCCTGGGTTCGTACATCCGCCATCACTCATTATATGCCCATTCAGACCATGCGC 43577 Query 130844 CGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTTTCT 130903 ||||| ||||| ||| | | || | || ||||| ||||| |||| ||| | Sbjct 43576 TGCATCTGCACATTCTAACACTGCGCTCAACTGCGGATACCCAACACCAGCCTTTTTCCG 43517 Query 130904 TGTAGTACAAACAGCACCTGGACCAATACCAA 130935 |||||||| || | |||||||||||| |||| Sbjct 43516 CGTAGTACACACTGAACCTGGACCAATCCCAA 43485 >seq82 Length=127425 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| |||| |||||||| || || ||||| |||||||| || || || || ||| Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||||| | ||||| |||||||||| || || || |||| Sbjct 56293 TTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAAA 56352 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || ||||||||||||||||| Sbjct 56353 GTCTTTACAAAAATCTGCAT 56372 >seq975 Length=35238 Score = 100 bits (110), Expect = 9e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 54811 TGATGATATTTTTCATTGGCAAGCAACAATTATGGGACCAGAAGATACCCCGTATCAAGG 54870 ||| ||| ||||||||||||| |||||||||||||| || ||| | || || ||||| Sbjct 24618 TGACGATCTTTTTCATTGGCAGGCAACAATTATGGGTCCTCCAGAGTCACCTTACCAAGG 24559 Query 54871 TGGTATATTTGAGTTAAGAATTGATTTTCCACAAGATTATCCATTTAAACCTCCAAATGT 54930 |||| ||||| | | |||| | |||||| ||| |||||||| || || || || || Sbjct 24558 TGGTGTATTTTTTCTGACAATTCACTTTCCAACAGACTATCCATTCAAGCCACCGAAAGT 24499 Query 54931 AGTTTTTACTACAAAGATTTATCAT 54955 || ||||| ||| || |||||| Sbjct 24498 AGCATTTACAACACGCATCTATCAT 24474 >seq263 Length=84048 Score = 96.9 bits (106), Expect = 1e-14 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206547 AATATTATGTATATGTAATCCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTT 206606 || |||||| | | || ||||| || || || ||| ||||| |||||||| | | Sbjct 20241 AACATTATGAACACTCAAACCAATGCCGCCAGCATTTTTCGAAATTAGAGCACATT-TCT 20299 Query 206607 TAAT-GTATTATAAATTCCATCAACACTATCACTTTCCATAGCAATTAAAAAACAAGAAC 206665 |||| || ||| | ||| | ||| ||||||| ||| | || || | |||||| |||| Sbjct 20300 TAATCGTCTTAAATATTTCTTCAGAACTATCATCTTCTACAGTAAGCAGAAAACACGAAC 20359 Query 206666 TTAATTGTGGTCGTGGCGTTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATT 206725 | | ||| ||||| || || |||||||||||| ||||||||||| ||||| | Sbjct 20360 TCATTTGAGGTCGACATGTACCGCTATTAAATAAAGTTGGAGTAGCATGAGTAAACCAAC 20419 Query 206726 TTTGAGACATTAAATTATAAGT 206747 || ||||| |||||||| || Sbjct 20420 GTTCGGACATCAAATTATATGT 20441 >seq1 Length=360011 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 |||| |||||| |||||||||||||||||| | || || ||||| ||||| | || | Sbjct 165434 TCAGTAGGAATGCCTTCTTTATCCTGAATTCTCGCCTTCACATTTTCAATAGTGTCTAAA 165493 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | ||||| |||| ||| || || || ||||| |||||||||||||| Sbjct 165494 GGTTCCGCCTCAAGGGTAATAGTCGCACCCGTGAGGGTTTTAACAAAAATCTGCAT 165549 >seq194 Length=96315 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 267036 GAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCT 267095 ||| |||||||||||| | | || ||||||| || ||||| |||||||||||||||||| Sbjct 39042 GAAGATATGCCATTTACTAATGAGGGAATTACTCCAGATATAATTATTAATCCTCATGCT 39101 Query 267096 ATTCCTAGTCGTATGACAATTGGTCAATT 267124 | || ||||||||||||||||| || Sbjct 39102 GTACCATCACGTATGACAATTGGTCACTT 39130 >seq32 Length=175846 Score = 84.2 bits (92), Expect = 7e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 183647 AAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGT 183706 |||||| | || ||||| | || ||| |||||||||||||||| || || ||| Sbjct 123225 AAATTCCGAAACCAAATGATTAACCAATGCGTTATCAAAATCTTCACCGCCCAAGAATGT 123284 Query 183707 ATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATC 183766 || ||| ||| | ||| |||||||||| ||| | | ||| | ||||| || | ||| Sbjct 123285 GTCTCCATTAGTTGATTTCACTTCAAATACTCCTTTCTGAATTTCCAAAATCGAAATATC 123344 Query 183767 AAATGTACCACCACCCAAATC 183787 |||||| |||||||| | ||| Sbjct 123345 AAATGTGCCACCACCAAGATC 123365 Score = 84.2 bits (92), Expect = 7e-11 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || |||||||| ||||| ||||| || | |||||||| | | |||||||| || Sbjct 123485 GCTACAAAAGACGCTGGACAAATTGCTGGCCTCAATGTTCTTCGTGTTATTAATGAGCCA 123426 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||||||| | | ||||| | || ||| | ||| || || | ||| | Sbjct 123425 ACAGCTGCAGCATTATCTTATGGCATGGACAAAGT---TGAG---GATAAGATAATTGCT 123372 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 ||| ||| | |||||||| || |||||| | || | | | || | | ||| | Sbjct 123371 GTTTACGATCTTGGTGGTGGCACATTTGATATTTCGATTTTGGAAATTCAGAAAGGAGTA 123312 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT-GGAGAAGATTTTGATAA 349890 |||||||| ||| ||||| ||| || ||| |||||| || |||||||||||||| Sbjct 123311 TTTGAAGTGAAATCAACTAATGGAGACACAT-TCTTGGGCGGTGAAGATTTTGATAA 123256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515179092329837