Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq82 102 9e-17 seq84 98.7 1e-15 >seq82 Length=127425 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| ||||| | || || || |||||||| ||||| |||||||| Sbjct 56375 ATTATGCAGATTTTTGTAAAGACTTTAACTGGTAAAACTATTACACTTGATGTTGAGTCT 56316 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | || | |||| | || || || || || ||||| || || ||||| |||||| Sbjct 56315 TCTGACACAATCGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCGCCAGAC 56256 Query 27523 CAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || |||||||||| ||| Sbjct 56255 CAGCAACGGTTAATTTTTGCCGGT 56232 >seq84 Length=125161 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || ||||| || ||||| ||||| || ||||| Sbjct 124900 AATGCAAATATTCGTGAAAACATTGACAGGCAAAACAATTACCCTTGATGTCGAGTCTTC 124959 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || |||| || || ||||| |||||||||||||| || ||||| || Sbjct 124960 AGACACAATTGAGAACGTGAAAGCCAAGATTCAAGACAAGGAGGGAATCCCGCCAGAGCA 125019 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||| | || |||||||||||| Sbjct 125020 GCAAAGGCTCATTTTTGCTGGT 125041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570282747074480