Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_029048.1 Length=131326 Score E Sequences producing significant alignments: (Bits) Value seq1449 98.7 8e-16 >seq1449 Length=21244 Score = 98.7 bits (108), Expect = 8e-16 Identities = 299/458 (65%), Gaps = 13/458 (3%) Strand=Plus/Minus Query 94630 ATATTTAAATGGTATATACTCACATAACCAAACATTGTTTTCAGATAAGTAAAACTTATA 94689 ||| | ||| || | | | ||||| | |||||| || |||||||| | |||||||| | Sbjct 3807 ATAATCAAACGGCACAGAATCACAAAGCCAAACTTTATTTTCAGACAGAAAAAACTTAAA 3748 Query 94690 ACCATTTTCATACATTTTGCCTGTATTAATTTTTAAAATTACAGGCGTACCATGTCTTTT 94749 || |||| |||| |||||| | | ||| | || || |||||| | | Sbjct 3747 TCCTTTTTGCAGCATTGGAGTTGTATTTACCTGTAACACGACCGGATGACCATGACGTCG 3688 Query 94750 ACCAACTTTAACAGCAATATCTATATCCCTTGATAAATGTACATACAGTCTACTTTGTTT 94809 ||| || | ||| | |||||||| || ||||||| ||| | || | |||| | Sbjct 3687 ACCTACAGATAATGCAGTCTCTATATCACTGGATAAATTTACTAAGAGACGTTGTTGTCT 3628 Query 94810 AATAATACCTTCATTTTTAATATTGTCTAAAAATCTAGTAGCTGTTCCATGATA-AAGAT 94868 || || | |||||||| | |||||||| ||||| || ||||| || || Sbjct 3627 TTGTATTCCATGCTTTTTAATGCTAGGCAAAAATCTTTCTGCTGTACCGTGATATAACAT 3568 Query 94869 ATTTTGGTGGTTCTAATTCCCTC----AATTCCA---CATTAACATTAATTGAATGTCCT 94921 | ||||| | || |||| || || | || || || ||| ||||||||| Sbjct 3567 AGCC-GGTGG----AGTTTCCTCTTTTAACTCAATGTCAATACCAATAAGCGAATGTCCT 3513 Query 94922 TGATTTGCTCTAATCTTGCTTCTATCATCATTAAAACTGTACCTTTGCTTATTATCTTCT 94981 ||||| || | ||| || | |||| ||||||| || | | |||| ||||||| Sbjct 3512 TGATTAGCACGAATTTTTGTATGATCACCATTAAATGAATATCGATTCTTACAATCTTCT 3453 Query 94982 TTAACTATTTGCTCAAGGATTTCTATATTAATATTTCTACCAGTATTATTTATTTTTTCA 95041 ||||| |||| || || | ||| ||| | ||| | || || | ||||||| || Sbjct 3452 TTAACAATTTTTTCTAGTAATTCCATAGTTATAAACCGTCCTGTTTGATTTATTCCGACA 3393 Query 95042 ATCAATTCATTAACATCTGCATATCCATAGTCATCTAA 95079 ||||| |||||||||| || | |||| ||||| || Sbjct 3392 ATCAAGTCATTAACATTAGCCCAACCATGTTCATCCAA 3355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420098538771353