Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq141 91.5 4e-13 seq2930 86.0 1e-11 >seq141 Length=103872 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 ||||| || ||||| ||||| || || ||||| || || ||||||||||| ||||| || Sbjct 13232 AATATCTGTCCATCGGTAATGGAAATTACATTAGTTGGAATATAAGCAGACACATCGCCA 13291 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || |||||||||| ||||| || || || || || ||||| ||| Sbjct 13292 GCCTGTGTTTCGATTACAGGCAAAGCCGTAAGAGAACCACCGCCA 13336 >seq2930 Length=1850 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| | || || ||||||||||||| ||||||||||| | | | Sbjct 1500 GGTAAGGTTCTTCGTGTATCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCCC 1441 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGCG 7855 |||| || ||||||||||||| |||||| |||| | | |||| ||||| || | ||| Sbjct 1440 CGTCTATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGAATGCTTAATGCG 1381 Query 7856 TTAGCTTAATTA 7867 |||||| |||| Sbjct 1380 TTAGCTGCATTA 1369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192471931572026