Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq263 111 2e-19 >seq263 Length=84048 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 |||||||| ||| ||||| || ||| || || || ||||||||||| | ||| ||| Sbjct 20522 TCAATAGCACCTTCAATGTCATTTTTATGTATCCCAACTGCTACACGCATGAGCATGTGC 20581 Query 78525 TGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 78584 || |||| ||||| | | ||||||||| | ||| || || | ||||||||||||| Sbjct 20582 TGTGGTCGCTCAACAACTTCACCATTTATTTTTAGCAAATACGACTGTTCCAAAGTTTTA 20641 Query 78585 AAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTT 78640 || |||||||| | || || || |||| || |||| || || ||||| ||||| Sbjct 20642 AAGCCAAAATACGTATACGAGAAATCTCGATCATAAACGATCACGGAATTAAGTTT 20697 Score = 89.7 bits (98), Expect = 7e-13 Identities = 143/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| | |||||| ||| || |||||||| |||| || ||||||||||| Sbjct 19744 TTCAAATTCCTGGCCCCAACAATCCGGTAACCCAGGGCACTCATCAGGACACATCAATGA 19803 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| |||| | |||||||||| |||||| | |||||| | ||| | ||||| || Sbjct 19804 CCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACCCACAAAGCAAAGAA 19863 Query 78044 TAGATCTCGGGTTCTATGTTCTTCAT---TTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 || ||| | || || |||| |||| | || |||| || | | |||||| Sbjct 19864 TAAATCCC---TTGTACGTTCCTCATCGGTACCAATATTATTACGCATTAGTAAAAACTC 19920 Query 78101 CATAATATCAGAATGCCATGGTTC 78124 | |||||||| |||||||| || Sbjct 19921 AAAAATATCAGCGTGCCATGGCTC 19944 Score = 89.7 bits (98), Expect = 7e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| ||| ||| |||||||| |||||| ||||| | |||||||||||| ||| Sbjct 24609 GTATACAGCTTTTCGAATTCATCGCCCCAACTATCATAAAGACCAGGGCATTCAGCAGGG 24668 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || ||||| | ||| || ||||||| ||||| || |||||||| | |||| Sbjct 24669 CACATAAACGACCATATAGCATTATCTCTAACTCGCTTCATGAAAAGATCAGGCACCCAT 24728 Query 78033 AGAGCAA 78039 | |||| Sbjct 24729 AATGCAA 24735 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 ||| |||||||| | |||||| || ||||||||||| |||| ||| | | | || || Sbjct 19067 AAATGCATCTGCAAGTCCCTGCACACCAATACCAATTGGTCGATGACGCATGTTTGAGTG 19126 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 ||||| ||| |||||||||||||| || || || |||||||| | ||| Sbjct 19127 TTTAGTTTCAGGAATAGGATAATAGTTGCCATCAATTATTTTATTCAAATT 19177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694635117246560