Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq263 105 1e-17 >seq263 Length=84048 Score = 105 bits (116), Expect = 1e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 |||||| | |||| || || || ||| || || || || |||||||| | ||| ||| Sbjct 20522 TCAATAGCACCTTCAATGTCATTTTTATGTATCCCAACTGCTACACGCATGAGCATGTGC 20581 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || ||||| || ||| | | ||||||||| | ||| || || | ||||||||||||| Sbjct 20582 TGTGGTCGCTCAACAACTTCACCATTTATTTTTAGCAAATACGACTGTTCCAAAGTTTTA 20641 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235 || |||||||| | || || || |||| || |||| || || ||||| ||||| Sbjct 20642 AAGCCAAAATACGTATACGAGAAATCTCGATCATAAACGATCACGGAATTAAGTTT 20697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || ||||||||| | |||||| ||| || ||||| || |||| ||| Sbjct 19733 GTATACAAAGCTTCAAATTCCTGGCCCCAACAATCCGGTAACCCAGGGCACTCATCAGGA 19792 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 |||||||||||||| |||| | ||||| |||| |||||| | |||||| | ||| Sbjct 19793 CACATCAATGACCAAATTTCATCATTTTTAACTCGTTCCATAAATAAATCAGGCACCCAC 19852 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT---TTCCTGTATTCTTTTTAAGA 76684 | ||||| |||| ||| | || ||||||| |||| | || |||| || | Sbjct 19853 AAAGCAAAGAATAAATCCC---TTGTACGTTCCTCATCGGTACCAATATTATTACGCATT 19909 Query 76685 TCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719 || ||||| | |||||||| |||||||| || Sbjct 19910 AGTAAAAACTCAAAAATATCAGCGTGCCATGGCTC 19944 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 76090 AAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 76149 |||||||||||| |||||||| || ||||||||||| |||| ||| | | | || || Sbjct 19067 AAATGCATCTGCAAGTCCCTGCACACCAATACCAATTGGTCGATGACGCATGTTTGAGTG 19126 Query 76150 TTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 || || ||| |||||||| ||||| || ||| || |||||||| | ||| Sbjct 19127 TTTAGTTTCAGGAATAGGATAATAGTTGCCATCAATTATTTTATTCAAATT 19177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712899831593280