Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq82 122 2e-22 seq84 100 6e-16 >seq82 Length=127425 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| || || ||||| ||||| |||||| || || |||||||||||||||||| Sbjct 56233 CCGGCAAAAATTAACCGTTGCTGGTCTGGCGGAATGCCTTCTTTGTCTTGGATCTTTGCT 56292 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | ||||| ||||| |||| || || || || || || || ||||| || ||| Sbjct 56293 TTTACATTTTCGATTGTGTCAGAAGACTCAACATCAAGTGTAATAGTTTTACCAGTTAAA 56352 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || |||||||| Sbjct 56353 GTCTTTACAAAAATCTGCAT 56372 >seq84 Length=125161 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| || | | ||| || || ||| || |||||||||||||| ||||| ||| Sbjct 125040 CCAGCAAAAATGAGCCTTTGCTGCTCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 124981 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| |||| ||||| || || || || || || || ||||| Sbjct 124980 TTCACGTTCTCAATTGTGTCTGAAGACTCGACATCAAGGGTAATTGTTTTGCCTGTCAAT 124921 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 || || |||||||| |||||||| Sbjct 124920 GTTTTCACGAATATTTGCATTTT 124898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046687177388866