Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq84 104 6e-17 seq82 86.0 2e-11 >seq84 Length=125161 Score = 104 bits (114), Expect = 6e-17 Identities = 111/146 (76%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||| | ||||| ||||| || ||||| || || || Sbjct 124898 AAAATGC---AAATATTCGTGAAAACATTGACAGGCAAAACAATTACCCTTGATGTCGAG 124954 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||| || |||||||| ||| |||||||| ||||| || |||||||| || Sbjct 124955 TCTTCAGACACAATTGAGAACGTGAAAGCCAAGATTCAAGACAAGGAGGGAATCCCGCCA 125014 Query 178035 GACCAGCAACGACTTATCTTCGCCGG 178060 || |||||| | || || || || || Sbjct 125015 GAGCAGCAAAGGCTCATTTTTGCTGG 125040 >seq82 Length=127425 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | || || ||||| || || || || || || || ||| Sbjct 56369 CAGATTTTTGTAAAGACTTTAACTGGTAAAACTATTACACTTGATGTTGAGTCTTCTGAC 56310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| |||||| || ||||||||||| || || || ||||||||| Sbjct 56309 ACAATCGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCGCCAGACCAGCAA 56250 Query 178044 CGACTTATCTTCGCCGG 178060 || | || || ||||| Sbjct 56249 CGGTTAATTTTTGCCGG 56233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203671374935526