Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq4722 98.7 1e-15
seq751 95.1 1e-14
seq194 89.7 6e-13
seq22 87.8 2e-12
>seq4722
Length=719
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|| ||| || | |||| |||| ||||||||||||| |||||| | ||||||||||| |
Sbjct 299 ATAAAAGATGTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 240
Query 60114 TACTCACCACTATACTACCGAGGA 60137
||||||||||||||||||||||||
Sbjct 239 TACTCACCACTATACTACCGAGGA 216
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| |||| ||||||||||||| |||||| | ||||||||||| ||||| ||||||
Sbjct 499 TCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCACT 558
Query 60125 ATACTACCGAGGATTG 60140
||||||||||||| ||
Sbjct 559 ATACTACCGAGGACTG 574
>seq751
Length=30410
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||||| |||| |||| ||||||||||||| |||||| | ||||||||||| ||||
Sbjct 5468 AAAAATGCGCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 5409
Query 60117 TCACCACTATACTACCGAGGAT 60138
| ||||||||||||||||||||
Sbjct 5408 TTACCACTATACTACCGAGGAT 5387
>seq194
Length=79424
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||||| | ||||||||||| |||||| ||||||
Sbjct 78811 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCTCCACTA 78870
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 78871 TACTACCGAGGA 78882
>seq22
Length=171845
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||| | |||| ||| |||||||||||||| |||| ||| || || | || ||
Sbjct 88140 ACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCTTCC 88199
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
| |||||| || || || || | ||| || || || | || | || |||||| ||| ||
Sbjct 88200 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCC-TG 88258
Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | ||||| | | | ||| || | || || || | ||||| || ||
Sbjct 88259 AATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTCTT 88318
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || ||||| || ||||| || |||||
Sbjct 88319 GCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571776300473840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |