Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq22 104 2e-17
seq532 98.7 9e-16
>seq22
Length=171845
Score = 104 bits (114), Expect = 2e-17
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || |||||||||||||| || |||||||||||| | || ||||| | ||
Sbjct 89023 ATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCT 88964
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||||| || ||| || ||| | | |||||||||| | ||||| |||||
Sbjct 88963 GACACTATCGAAAATGTTAAAGCAAAGATTCAAG-ACAAGGAAGGAATTCCGCCGGACCA 88905
Query 31312 GCAGCGTCTAATATTCGCTGG 31332
|||||| || || || || ||
Sbjct 88904 GCAGCGACTTATTTTTGCCGG 88884
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || || ||||| || || || |||||| |||| |||||| | |||
Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||||| || || | ||| || |||||||| | || || || |||
Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| ||||| || |||||
Sbjct 89813 CAGCGCCTAATTTTTGCTGG 89794
>seq532
Length=41884
Score = 98.7 bits (108), Expect = 9e-16
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866
||||| || | ||||| || || || |||||||| | |||||| | ||| | ||| | |
Sbjct 29699 TCGATTGCAGTTTCAATATCTTCACCATGTATACCAAGGGCGACTCTCATTAACATATGT 29640
Query 23867 TGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTA 23926
||||| | || || |||| || ||||| |||||||||||||||| | |||||
Sbjct 29639 TGAGGACGTTCAGCCACTGCGCCATTGATTTTTAACAGATATGAACGTTCAAGAGTTTTC 29580
Query 23927 AATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| ||||||||| ||| | | || ||||| || |||||||| ||
Sbjct 29579 AAACCAAAATAGGTGTAGCAATAATCCCGATCATGAACTATGGCTGA 29533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445734204521760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |