Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq22 104 2e-17 seq532 98.7 9e-16 >seq22 Length=171845 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || |||||||||||||| || |||||||||||| | || ||||| | || Sbjct 89023 ATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCT 88964 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||||| || ||| || ||| | | |||||||||| | ||||| ||||| Sbjct 88963 GACACTATCGAAAATGTTAAAGCAAAGATTCAAG-ACAAGGAAGGAATTCCGCCGGACCA 88905 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| || || || || || Sbjct 88904 GCAGCGACTTATTTTTGCCGG 88884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || ||||| || || || |||||| |||| |||||| | ||| Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || || | ||| || |||||||| | || || || ||| Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| ||||| || ||||| Sbjct 89813 CAGCGCCTAATTTTTGCTGG 89794 >seq532 Length=41884 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 ||||| || | ||||| || || || |||||||| | |||||| | ||| | ||| | | Sbjct 29699 TCGATTGCAGTTTCAATATCTTCACCATGTATACCAAGGGCGACTCTCATTAACATATGT 29640 Query 23867 TGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTA 23926 ||||| | || || |||| || ||||| |||||||||||||||| | ||||| Sbjct 29639 TGAGGACGTTCAGCCACTGCGCCATTGATTTTTAACAGATATGAACGTTCAAGAGTTTTC 29580 Query 23927 AATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||||||| ||| | | || ||||| || |||||||| || Sbjct 29579 AAACCAAAATAGGTGTAGCAATAATCCCGATCATGAACTATGGCTGA 29533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734204521760