Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq222 98.7 1e-15 seq532 84.2 3e-11 >seq222 Length=74321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 |||||||||||||| ||||||||||| |||||||| ||||| ||||| | ||||||| Sbjct 45002 TTTTTGGTATTCACTGACACGTTTTTCAAAAAAATTGGTTTTTCCTTCCACTGATATACG 45061 Query 35926 TTCCATGAAATCGAATGGATTG 35947 |||||| |||||||| |||||| Sbjct 45062 TTCCATAAAATCGAAAGGATTG 45083 >seq532 Length=41884 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 66030 |||| | || |||||| || || |||||||| | || || ||||||| |||| | |||| Sbjct 30716 TATAAAGTCTTTCGAATTCTTCACCCCAAACTTCGTGCAGACCAGGACTTTCAGCAGGAC 30657 Query 66031 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090 |||||| ||||| | |||||| || || | |||||| ||||| |||| ||| | Sbjct 30656 ACATCAGTGACCAAGTTTTGTCATCGCGAACACGCTCCATAAAAAGATCGGGAACCCATA 30597 Query 66091 GAGCTATAAATAAATCTCT 66109 | | |||||||||||| Sbjct 30596 AGCCAAGAAATAAATCTCT 30578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658125263469520