Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq22 100 3e-16 >seq22 Length=171845 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || |||| || |||||||||||||| || || || Sbjct 88121 GCCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGA 88180 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| | ||| || || ||| | |||| ||||| ||||| || || Sbjct 88181 CAGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGG 88240 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || || || ||| | || | ||| | | ||| | || || | | ||| | Sbjct 88241 GATGCCCTCCTTATC-CTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTA 88299 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||||||| |||| |||||| || ||||| ||||| Sbjct 88300 CCTCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496028171777600