Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq22 158 3e-33
seq546 123 6e-23
>seq22
Length=171845
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| | ||| || ||||| |||||||| |||||||| || || | || |||
Sbjct 88137 AGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCT 88196
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | || ||||| |||||||| | | |||||||| || || || || || ||||||
Sbjct 88197 TCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCC 88256
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| ||||| |||||||| | ||||| || |||||||| | || || |||
Sbjct 88257 TGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTC 88316
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || ||||| ||||||||||||||
Sbjct 88317 TTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||||||||| | ||| |||||||| || || ||||| ||||| || || || ||
Sbjct 89794 CCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGCC 89853
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | || ||| || ||| ||||| || || |||||||||||||| |||
Sbjct 89854 TTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAGT 89913
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || || |||||
Sbjct 89914 GTTTTCACGAAAATTTGCAT 89933
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| ||||| | || ||||| || || || ||||| |||||||||||||| |||
Sbjct 89440 CCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGCT 89499
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| || | |||||| || ||| || || | || ||||| || || || |||
Sbjct 89500 TTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAGT 89559
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||| || |||||
Sbjct 89560 GTTTTGACAAAGATTTGCAT 89579
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || | ||| || || || || |||||||| || || ||||||||||||
Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCT 88943
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | || || || || || || | || || || |||||||| ||
Sbjct 88944 TTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGA 89003
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| ||||||||||| |||||
Sbjct 89004 GTCTTTACAAATATTTGCAT 89023
>seq546
Length=41299
Score = 123 bits (136), Expect = 6e-23
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || || || |||||||| || || |||||||| |||||||| || | |
Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| | |||||| || || || || || || || || |
Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAAA 26570
Query 104540 GTTTTTACAAATATCTGCATTTTGTGTACAGTATTTATTA 104579
||||| ||||||||||||||||||| | |||| | |||||
Sbjct 26571 GTTTTAACAAATATCTGCATTTTGTTTTCAGT-TATATTA 26609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151313161256824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |