Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq22 158 3e-33 seq546 123 6e-23 >seq22 Length=171845 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| || ||||| |||||||| |||||||| || || | || ||| Sbjct 88137 AGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCT 88196 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || ||||| |||||||| | | |||||||| || || || || || |||||| Sbjct 88197 TCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCC 88256 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| |||||||| | ||||| || |||||||| | || || ||| Sbjct 88257 TGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTC 88316 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| |||||||||||||| Sbjct 88317 TTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||||||||| | ||| |||||||| || || ||||| ||||| || || || || Sbjct 89794 CCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGCC 89853 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || ||| || ||| ||||| || || |||||||||||||| ||| Sbjct 89854 TTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAGT 89913 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 89914 GTTTTCACGAAAATTTGCAT 89933 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| ||||| | || ||||| || || || ||||| |||||||||||||| ||| Sbjct 89440 CCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGCT 89499 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | |||||| || ||| || || | || ||||| || || || ||| Sbjct 89500 TTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAGT 89559 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| Sbjct 89560 GTTTTGACAAAGATTTGCAT 89579 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||| || || || || |||||||| || || |||||||||||| Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCT 88943 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || || || || | || || || |||||||| || Sbjct 88944 TTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGA 89003 Query 104540 GTTTTTACAAATATCTGCAT 104559 || ||||||||||| ||||| Sbjct 89004 GTCTTTACAAATATTTGCAT 89023 >seq546 Length=41299 Score = 123 bits (136), Expect = 6e-23 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || || || |||||||| || || |||||||| |||||||| || | | Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| | |||||| || || || || || || || || | Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAAA 26570 Query 104540 GTTTTTACAAATATCTGCATTTTGTGTACAGTATTTATTA 104579 ||||| ||||||||||||||||||| | |||| | ||||| Sbjct 26571 GTTTTAACAAATATCTGCATTTTGTTTTCAGT-TATATTA 26609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151313161256824