Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1975 125 1e-24 seq982 125 1e-24 seq3054 116 6e-22 >seq1975 Length=6423 Score = 125 bits (138), Expect = 1e-24 Identities = 186/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | | || |||||||| || ||||| || || ||||||||||| Sbjct 2789 GCGAAGCGTCATCGCA-AGGTATTGCGAGATAATATTCAAGGGATTACAAAGCCAGCTAT 2731 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| | ||||| || || |||||| | || || || | ||||| |||| Sbjct 2730 ACGACGCTTGGCTAGGCGTGGGGGTGTTAAGCGTATTTCCGGTTTAATATATGACGAGAC 2671 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | | || ||| | | | || || | |||||| | ||| || Sbjct 2670 CAGAGGTGTGCTCAGAATATTCTTGGAAAATGTCATTCGTGATGCAGTAACTTATTGTGA 2611 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||| | ||||| || || | |||||| | ||||| || ||||||||||| || Sbjct 2610 GCATGCCAAAAGAAAGACAGTAACTGCTATGGATGTGGTCTACGCTTTGAAACGTCAGGG 2551 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| ||||| Sbjct 2550 GCGTACTATTTATGGATTTGG 2530 >seq982 Length=21840 Score = 125 bits (138), Expect = 1e-24 Identities = 186/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || ||||| ||||| || ||||| ||||||||||| Sbjct 10842 GCGAAGAGGCATCGCA-AGGTATTGCGTGATAATATCCAGGGGATCACGAAGCCAGCTAT 10784 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| | || || || || ||||| ||||||| ||| | || || || | Sbjct 10783 ACGGCGCTTGGCAAGACGAGGCGGCGTGAAGCGCATCTCTGGTTTGATATACGAGGAAAC 10724 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| || || ||| ||||||| ||| || | ||| || Sbjct 10723 CCGCAGTGTGCTAAAGACATTTCTGGAGAATGTTATCCGTGACGCAGTTACTTATTGTGA 10664 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| || || | ||||| | ||||||||||||||||| ||||| Sbjct 10663 ACACGCCAAAAGGAAGACCGTTACTGCTATGGACGTAGTCTATGCATTGAAACGACAAGG 10604 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| | ||||||||||| Sbjct 10603 CCGTACACTCTATGGTTTTGG 10583 >seq3054 Length=1793 Score = 116 bits (128), Expect = 6e-22 Identities = 184/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | | || || ||||| || || || ||||| ||||||||||| Sbjct 810 GCGAAGCGGCATCGCA-AGGTATTGCGTGATAATATTCAGGGGATCACGAAGCCAGCTAT 752 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| | || || || || ||||| ||||||| ||| | || || || | Sbjct 751 ACGGCGCTTGGCAAGACGAGGCGGCGTGAAGCGCATCTCTGGTTTGATATACGAGGAAAC 692 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || || ||||||| || || | | ||||| | || || | ||| || Sbjct 691 CCGCAGCGTGCTGAAGATATTTCTGGAAAATGTTATTCGAGACGCAGTTACTTATTGTGA 632 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| || || | ||||| | ||||||||||||||||| ||||| Sbjct 631 ACACGCCAAAAGGAAGACCGTTACTGCTATGGACGTAGTCTATGCATTGAAACGACAAGG 572 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| | ||||||||||| Sbjct 571 CCGTACACTCTATGGTTTTGG 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069917134154