Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1975 125 1e-24
seq982 125 1e-24
seq3054 116 6e-22
>seq1975
Length=6423
Score = 125 bits (138), Expect = 1e-24
Identities = 186/261 (71%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||||||||||| | | || |||||||| || ||||| || || |||||||||||
Sbjct 2789 GCGAAGCGTCATCGCA-AGGTATTGCGAGATAATATTCAAGGGATTACAAAGCCAGCTAT 2731
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || ||||| | ||||| || || |||||| | || || || | ||||| ||||
Sbjct 2730 ACGACGCTTGGCTAGGCGTGGGGGTGTTAAGCGTATTTCCGGTTTAATATATGACGAGAC 2671
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
| | ||| | | || ||| | | | || || | |||||| | ||| ||
Sbjct 2670 CAGAGGTGTGCTCAGAATATTCTTGGAAAATGTCATTCGTGATGCAGTAACTTATTGTGA 2611
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || ||| | ||||| || || | |||||| | ||||| || ||||||||||| ||
Sbjct 2610 GCATGCCAAAAGAAAGACAGTAACTGCTATGGATGTGGTCTACGCTTTGAAACGTCAGGG 2551
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|||| |||||||| |||||
Sbjct 2550 GCGTACTATTTATGGATTTGG 2530
>seq982
Length=21840
Score = 125 bits (138), Expect = 1e-24
Identities = 186/261 (71%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||| | ||||||| | | || || ||||| ||||| || ||||| |||||||||||
Sbjct 10842 GCGAAGAGGCATCGCA-AGGTATTGCGTGATAATATCCAGGGGATCACGAAGCCAGCTAT 10784
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| | || || || || ||||| ||||||| ||| | || || || |
Sbjct 10783 ACGGCGCTTGGCAAGACGAGGCGGCGTGAAGCGCATCTCTGGTTTGATATACGAGGAAAC 10724
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| ||| | |||| || || ||| ||||||| ||| || | ||| ||
Sbjct 10723 CCGCAGTGTGCTAAAGACATTTCTGGAGAATGTTATCCGTGACGCAGTTACTTATTGTGA 10664
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| ||| | ||||| || || | ||||| | ||||||||||||||||| |||||
Sbjct 10663 ACACGCCAAAAGGAAGACCGTTACTGCTATGGACGTAGTCTATGCATTGAAACGACAAGG 10604
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||||| | |||||||||||
Sbjct 10603 CCGTACACTCTATGGTTTTGG 10583
>seq3054
Length=1793
Score = 116 bits (128), Expect = 6e-22
Identities = 184/261 (70%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| ||||||| | | || || ||||| || || || ||||| |||||||||||
Sbjct 810 GCGAAGCGGCATCGCA-AGGTATTGCGTGATAATATTCAGGGGATCACGAAGCCAGCTAT 752
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| | || || || || ||||| ||||||| ||| | || || || |
Sbjct 751 ACGGCGCTTGGCAAGACGAGGCGGCGTGAAGCGCATCTCTGGTTTGATATACGAGGAAAC 692
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| || ||||||| || || | | ||||| | || || | ||| ||
Sbjct 691 CCGCAGCGTGCTGAAGATATTTCTGGAAAATGTTATTCGAGACGCAGTTACTTATTGTGA 632
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| ||| | ||||| || || | ||||| | ||||||||||||||||| |||||
Sbjct 631 ACACGCCAAAAGGAAGACCGTTACTGCTATGGACGTAGTCTATGCATTGAAACGACAAGG 572
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||||| | |||||||||||
Sbjct 571 CCGTACACTCTATGGTTTTGG 551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069917134154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |