Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq119 98.7 3e-15 seq222 89.7 1e-12 >seq119 Length=100056 Score = 98.7 bits (108), Expect = 3e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 111316 TTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGT 111375 |||| || || |||||||| || | | ||||||||| |||| || ||||| |||||| Sbjct 84150 TTCCTCTGCTAACAACAAAACGCATTTTTTGGAAGGGTGTTGTTGAGGAACTGTTGTGGT 84209 Query 111376 TTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATG 111435 ||||||| ||| ||||||||||||| | | | | ||| ||| ||||| ||| ||| Sbjct 84210 TTATTCGAGGAGATACAAATGCAAATAATTTATCTGAGAAAGGTGTTAAAATCTGGAATG 84269 Query 111436 GAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATC 111495 |||||| || | | ||||| || | ||||| || | | | |||||| ||| Sbjct 84270 CAAATGGTTCTAGACAATTTCTCGACAAACTTGGTTTTACCAATCGAGCAGAAGGAGATT 84329 Query 111496 TCGGACCAGTTTACGGATTTCA 111517 | || || || || || ||||| Sbjct 84330 TAGGGCCTGTATATGGGTTTCA 84351 >seq222 Length=74321 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 ||||| || || | ||||||| ||| ||| | |||||||| |||||||| || |||||| Sbjct 45082 AATCCTTTCGATTTTATGGAACGTATATCAGTGGAAGGAAAAACCAATTTTTTTGAAAAA 45023 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGT 22946 | || |||||||||||||||||||||| Sbjct 45022 CGTGTCAGTGAATACCAAAAAGCAGGTGT 44994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303257111918396