Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq22 87.8 2e-12 seq546 82.4 7e-11 >seq22 Length=171845 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || |||| || | || || ||||| Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| |||||| || || || ||||| || || |||||| Sbjct 88288 GATACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAA 88229 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGCGATTATA 24168 || || |||||| | ||| ||||| | ||||||| | | | || ||| | | || | Sbjct 88228 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTG--ACTACA 88171 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||||||||| || ||| ||||||| || Sbjct 88170 ATATTCAAAAAGAGTCCACACTTCATTTGGT 88140 >seq546 Length=41299 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||||||||| | ||||| ||||| ||||| || ||| | || || | ||||| || Sbjct 26597 AAACAAAATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGA 26538 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 || || || ||||| | || ||| || ||| |||||||||||||| || || Sbjct 26537 AGCATCTGATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCC 26478 Query 24104 CGATCAACAGAGACTGATTT 24123 ||||| || ||||| |||| Sbjct 26477 TGATCAGCAAAGACTCATTT 26458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429905724175590